RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA605033" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA605033 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1858157 1858157 PRJNA605033_P_NODE_217922_length_159_cov_1.854839_g216353_i0 PRJNA605033 217922 159 1.854839 2.94919401 Silvanigrella aquatica 1915309 Bacteria Bacteria 113 5.95e-21   NTclustered gi|1114626566|gb|CP017834.1| 1915309 g216353 i0 93.421 52.0188679245283 76 5 48 0 71 146 175153 175078 Silvanigrella aquatica strain MWH-Nonnen-W8red chromosome blastn 8271 113 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae Silvanigrella Silvanigrella aquatica
19707758 19707758 PRJNA605033_P_NODE_101396_length_222_cov_1.930481_g99827_i0 PRJNA605033 101396 222 1.930481 4.28566782 Pseudobdellovibrio exovorus 453816 Bacteria Bacteria 86.1 1.94e-12   NTclustered gi|469929247|gb|CP003537.1| 1184267 g99827 i0 89.552 4.79279279279279 67 7 30 0 9 75 451090 451156 Bdellovibrio exovorus JSS, complete genome blastn 1064 86.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
23534138 23534138 PRJNA605033_P_NODE_152799_length_192_cov_1.356688_g151230_i0 PRJNA605033 152799 192 1.356688 2.60484096 Pseudobdellovibrio sp. HCB154 3386277 Bacteria Bacteria 195 2.6e-45   NTclustered gi|2872995934|gb|CP176530.1| 3386277 g151230 i0 86.264 108.71875 182 22 94 3 13 192 699332 699152 Pseudobdellovibrio sp. HCB154 chromosome, complete genome blastn 20874 195 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp. HCB154
24808412 24808412 PRJNA605033_P_NODE_202580_length_165_cov_1.169231_g201011_i0 PRJNA605033 202580 165 1.169231 1.92923115 Pseudobdellovibrio sp. HCB154 3386277 Bacteria Bacteria 298 1.61e-76   NTclustered gi|2872995934|gb|CP176530.1| 3386277 g201011 i0 99.39 86.5090909090909 164 1 99 0 2 165 700579 700416 Pseudobdellovibrio sp. HCB154 chromosome, complete genome blastn 14274 298 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp. HCB154
25371032 25371032 PRJNA605033_P_NODE_131380_length_215_cov_1.727778_g129811_i0 PRJNA605033 131380 215 1.727778 3.7147227 Pseudobdellovibrionaceae 213483 Bacteria Bacteria 311 2.83e-80   NTclustered gi|507148233|ref|NR_103040.1| 453816 g129811 i0 93.78 154.776744186046 209 9 96 4 9 215 776 982 Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence blastn 33277 311 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;