RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA605033" and tax_clade = "Stenosarchaea group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 5 ✖

bioproject 1

  • PRJNA605033 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3697509 3697509 PRJNA605033_P_NODE_88623_length_222_cov_2.219251_g87054_i0 PRJNA605033 88623 222 2.219251 4.92673722 Halobacteriales 2235 Archaea Archaea 111 3.2e-20   NTclustered gi|299123054|gb|CP002062.1| 795797 g87054 i0 95.652 1.52702702702703 69 3 31 0 1 69 1318414 1318482 Halalkalicoccus jeotgali B3, complete genome blastn 339 111 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus jeotgali
10074371 10074371 PRJNA605033_P_NODE_66048_length_222_cov_3.737968_g64479_i0 PRJNA605033 66048 222 3.737968 8.29828896 Halorubrum 56688 Archaea Archaea 52.8 0.02   NTclustered gi|1540603140|gb|CP030064.1| 634157 g64479 i0 100 0.252252252252252 28 0 13 0 160 187 2695383 2695356 Halorubrum sp. PV6 chromosome, complete genome blastn 56 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. PV6
20983543 20983543 PRJNA605033_P_NODE_113997_length_222_cov_1.727273_g112428_i0 PRJNA605033 113997 222 1.727273 3.83454606 Halorubrum ezzemoulense 337243 Archaea Archaea 56.5 0.002   NTclustered gi|1565814486|gb|CP034940.1| 337243 g112428 i0 96.97 0.148648648648649 33 1 15 0 188 220 2855919 2855951 Halorubrum ezzemoulense strain Fb21 chromosome, complete genome blastn 33 56.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum ezzemoulense
22260332 22260332 PRJNA605033_P_NODE_93758_length_222_cov_2.096257_g92189_i0 PRJNA605033 93758 222 2.096257 4.65369054 Haloplanus aerogenes 660522 Archaea Archaea 102 1.93e-17   NTclustered gi|1526250537|gb|CP034145.1| 660522 g92189 i0 91.781 0.657657657657658 73 6 33 0 3 75 1832118 1832046 Haloplanus aerogenes strain JCM 16430 chromosome, complete genome blastn 146 102 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloplanus Haloplanus aerogenes
24809379 24809379 PRJNA605033_P_NODE_72540_length_222_cov_2.914439_g70971_i0 PRJNA605033 72540 222 2.914439 6.47005458 Halalkalicoccus salilacus 3117459 Archaea Archaea 110 1.15e-19   NTclustered gi|2674869203|gb|CP144461.1| 3117459 g70971 i0 93.243 5.26576576576577 74 5 33 0 1 74 620372 620445 Halalkalicoccus salilacus strain FCH27 chromosome, complete genome blastn 1169 110 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus salilacus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;