RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA603943" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA603943 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10781415 10781415 PRJNA603943_P_NODE_36849_length_303_cov_1.004348_g36657_i0 PRJNA603943 36849 303 1.004348 3.04317444 Treponema succinifaciens 167 Bacteria Bacteria 531 2.9699999999999993e-146   NTclustered gi|2189493055|gb|CP091738.1| 167 g36657 i0 99.655 0.957095709570957 290 1 96 0 14 303 1983183 1982894 MAG: Treponema succinifaciens isolate nC27_bin.114.fa chromosome blastn 290 531 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema succinifaciens
17154148 17154148 PRJNA603943_P_NODE_12454_length_462_cov_0.928021_g12262_i0 PRJNA603943 12454 462 0.928021 4.28745702 Treponema peruense 2787628 Bacteria Bacteria 754 0   NTclustered gi|1946838279|gb|CP064936.1| 2787628 g12262 i0 96.104 5.73376623376623 462 18 100 0 1 462 1771422 1770961 Treponema peruense strain RCC2812 chromosome, complete genome blastn 2649 754 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema peruense
21544998 21544998 PRJNA603943_P_NODE_31017_length_325_cov_1.146825_g30825_i0 PRJNA603943 31017 325 1.146825 3.72718125 root 1 Root_unresolved Root_unresolved 507 5.42e-139   NTclustered gi|2189493055|gb|CP091738.1| 167 g30825 i0 97.945 103.363076923077 292 6 90 0 1 292 1984054 1983763 MAG: Treponema succinifaciens isolate nC27_bin.114.fa chromosome blastn 33593 512 0.990234375 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema succinifaciens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;