RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA603943" and tax_phylum = "Cyanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Cyanobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA603943 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17721189 17721189 PRJNA603943_P_NODE_60754_length_247_cov_0.879310_g60562_i0 PRJNA603943 60754 247 0.87931 2.1718957 root 1 Root_unresolved Root_unresolved 62.1 3.71e-5   NTclustered gi|2080647037|gb|CP080598.1| 984208 g60562 i0 100 11.834008097166 33 0 13 0 191 223 3423134 3423102 Sphaerospermopsis torques-reginae ITEP-024 chromosome blastn 2923 62.1 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Nostocales Aphanizomenonaceae Sphaerospermopsis Sphaerospermopsis torques-reginae
25369626 25369626 PRJNA603943_P_NODE_68280_length_242_cov_0.911243_g68088_i0 PRJNA603943 68280 242 0.911243 2.20520806 Gloeocapsopsis 693222 Bacteria Bacteria 348 2.48e-91   NTclustered gi|1142095202|gb|KU847399.1| 1433147 g68088 i0 92.562 299.057851239669 242 18 100 0 1 242 5075 4834 Gloeocapsopsis dulcis AAB1 = 1H9 16S ribosomal RNA, tRNA-Ile, 23S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence blastn 72372 348 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcales Chroococcaceae Gloeocapsopsis Gloeocapsopsis dulcis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;