RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA603943" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA603943 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1143118 1143118 PRJNA603943_P_NODE_39181_length_294_cov_2.574661_g38989_i0 PRJNA603943 39181 294 2.574661 7.56950334 Ciliophora 5878 SAR_Eukaryotes SAR_Eukaryotes 508 1.35e-139   NTclustered gi|2651357791|gb|PP174306.1| 41631 g38989 i0 97.959 86.5476190476191 294 4 100 1 1 294 2359 2068 Colpoda sp. isolate JGP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 25445 508 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
14606151 14606151 PRJNA603943_P_NODE_40452_length_290_cov_1.064516_g40260_i0 PRJNA603943 40452 290 1.064516 3.0870964 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 464 2.9099999999999993e-126   NTclustered gi|2651357791|gb|PP174306.1| 41631 g40260 i0 95.517 105.5 290 13 100 0 1 290 3390 3679 Colpoda sp. isolate JGP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 30595 464 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
15880528 15880528 PRJNA603943_P_NODE_54893_length_250_cov_0.870056_g54701_i0 PRJNA603943 54893 250 0.870056 2.17514 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 250 7.48e-62   NTclustered gi|146185323|ref|XM_001031586.2| 312017 g54701 i0 88.78 0.82 205 21 82 2 47 250 391 188 Tetrahymena thermophila SB210 40S ribosomal protein S13 partial mRNA blastn 205 250 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;