RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA603943" and tax_phylum = "Apicomplexa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA603943 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4404895 4404895 PRJNA603943_P_NODE_40224_length_291_cov_0.871560_g40032_i0 PRJNA603943 40224 291 0.87156 2.5362396 Cryptosporidium sp. horse genotype 564992 SAR_Eukaryotes SAR_Eukaryotes 353 6.599999999999998e-93   NTclustered gi|2274500370|gb|ON419491.1| 564992 g40032 i0 89.362 97.1030927835052 282 28 97 2 8 288 43 323 Cryptosporidium sp. horse genotype isolate HN16 actin gene, partial cds blastn 28257 353 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium sp. horse genotype
4405256 4405256 PRJNA603943_P_NODE_53224_length_251_cov_0.865169_g53032_i0 PRJNA603943 53224 251 0.865169 2.17157419 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.002   NTclustered gi|296005543|ref|XM_002809043.1| 36329 g53032 i0 96.97 0.386454183266932 33 1 13 0 7 39 3300 3268 Plasmodium falciparum 3D7 conserved Plasmodium protein, unknown function (PF3D7_1359600), partial mRNA blastn 97 56.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
15171185 15171185 PRJNA603943_P_NODE_10532_length_494_cov_4.078385_g10341_i0 PRJNA603943 10532 494 4.078385 20.1472219 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 907 0   NTclustered gi|14495562|gb|L21708.2|PFA34K 5821 g10341 i0 99.798 99.0728744939271 494 1 100 0 1 494 1308 815 Plasmodium berghei p23-like protein mRNA, partial cds blastn 48942 913 0.993428258488499 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium berghei

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;