RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA603943" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA603943 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3127801 3127801 PRJNA603943_P_NODE_26903_length_343_cov_0.940741_g26711_i0 PRJNA603943 26903 343 0.940741 3.22674163 Physarum polycephalum 5791 Evosea other_Eukaryota 250 1.07e-61   NTclustered gi|119552593|gb|EF140724.1| 5791 g26711 i0 82.034 42.7842565597668 295 51 86 2 47 340 127 420 Physarum polycephalum 14-3-3-like protein mRNA, complete cds blastn 14675 250 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
22254789 22254789 PRJNA603943_P_NODE_57738_length_248_cov_0.880000_g57546_i0 PRJNA603943 57738 248 0.88 2.1824 Fuligo septica 159720 Evosea other_Eukaryota 444 3.17e-120   NTclustered gi|37515398|emb|AJ584697.1| 159720 g57546 i0 99.19 78.2459677419355 247 0 99 2 2 248 7775 7531 Fuligo septica 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene, isolate NY-1 blastn 19405 444 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo septica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;