RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA602115" and tax_phylum = "Pisuviricota"

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tax_superkingdom 1

tax_phylum 1

  • Pisuviricota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA602115 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
575612 575612 PRJNA602115_P_NODE_1_length_7596_cov_5.270206_g0_i0 PRJNA602115 1 7596 5.270206 400.32484776 Potyvirus sacchari 3240610 Viruses Viruses 13729 0   NTclustered gi|1173652586|gb|KU886553.1| 12224 g0 i0 99.289 99.675355450237 7596 54 100 0 1 7596 8214 619 Sugarcane mosaic virus isolate Yunan, complete genome blastn 757134 13729 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus sacchari
4403412 4403412 PRJNA602115_P_NODE_4_length_4429_cov_10.644689_g0_i1 PRJNA602115 4 4429 10.644689 471.45327581 Potyvirus sacchari 3240610 Viruses Viruses 8022 0   NTclustered gi|1173652586|gb|KU886553.1| 12224 g0 i1 99.368 93.5527207044479 4428 28 99 0 2 4429 9598 5171 Sugarcane mosaic virus isolate Yunan, complete genome blastn 414345 8022 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus sacchari
4403433 4403433 PRJNA602115_P_NODE_5724_length_265_cov_2.367647_g5699_i0 PRJNA602115 5724 265 2.367647 6.27426455 Potyvirus sacchari 3240610 Viruses Viruses 473 4.3599999999999987e-129   NTclustered gi|447380343|gb|JX047396.1| 12224 g5699 i0 98.868 74.777358490566 265 3 100 0 1 265 6557 6293 Sugarcane mosaic virus isolate NX7271, complete genome blastn 19816 473 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus sacchari
5679486 5679486 PRJNA602115_P_NODE_5_length_4405_cov_9.531077_g0_i2 PRJNA602115 5 4405 9.531077 419.84394185 Potyvirus sacchari 3240610 Viruses Viruses 7354 0   NTclustered gi|1728384937|gb|MH580837.1| 12224 g0 i2 96.82 94.6061293984109 4403 138 99 2 5 4405 9539 5137 Sugarcane mosaic virus strain Shanxi, complete genome blastn 416740 7354 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus sacchari
6953924 6953924 PRJNA602115_P_NODE_1226_length_531_cov_4.838298_g1201_i0 PRJNA602115 1226 531 4.838298 25.69136238 Potyvirus sacchari 3240610 Viruses Viruses 970 0   NTclustered gi|987898853|gb|KU171817.1| 12224 g1201 i0 99.623 84.5875706214689 531 2 100 0 1 531 547 17 Sugarcane mosaic virus isolate CN:HB:15, complete genome blastn 44916 970 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus sacchari
13329715 13329715 PRJNA602115_P_NODE_4051_length_307_cov_1.821138_g4026_i0 PRJNA602115 4051 307 1.821138 5.59089366 Potyvirus sacchari 3240610 Viruses Viruses 518 2.35e-142   NTclustered gi|1782804217|gb|MN756484.1| 12224 g4026 i0 100 91.1074918566775 280 0 91 0 1 280 3583 3862 Sugarcane mosaic virus isolate SCMV Mara13-TZA, complete genome blastn 27970 518 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus sacchari
19702251 19702251 PRJNA602115_P_NODE_16_length_3300_cov_7.861377_g0_i3 PRJNA602115 16 3300 7.861377 259.425441 Potyvirus sacchari 3240610 Viruses Viruses 5862 0   NTclustered gi|1173652586|gb|KU886553.1| 12224 g0 i3 98.727 99.5763636363636 3300 42 100 0 1 3300 4915 8214 Sugarcane mosaic virus isolate Yunan, complete genome blastn 328602 5862 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus sacchari
24801909 24801909 PRJNA602115_P_NODE_3560_length_324_cov_1.589354_g3535_i0 PRJNA602115 3560 324 1.589354 5.14950696 Potyvirus sacchari 3240610 Viruses Viruses 582 8.729999999999998e-162   NTclustered gi|1368163998|gb|MF467399.1| 12224 g3535 i0 99.074 88.9197530864197 324 3 100 0 1 324 6961 7284 Sugarcane mosaic virus isolate NA41-Tz, complete genome blastn 28810 582 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus sacchari

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;