RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA602115" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA602115 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14604500 14604500 PRJNA602115_P_NODE_10572_length_204_cov_0.895105_g10547_i0 PRJNA602115 10572 204 0.895105 1.8260142 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 289 1.2499999999999998e-73   NTclustered gi|290973181|ref|XM_002669282.1| 5762 g10547 i0 94.18 1.91666666666667 189 11 93 0 3 191 256 444 Naegleria gruberi vacuolar protein sorting 55 superfamily protein (NAEGRDRAFT_82178), partial mRNA blastn 391 289 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
24801824 24801824 PRJNA602115_P_NODE_11200_length_203_cov_0.873239_g11175_i0 PRJNA602115 11200 203 0.873239 1.77267517 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 331 2.03e-86   NTclustered gi|290997975|ref|XM_002681511.1| 5762 g11175 i0 96.059 1 203 8 100 0 1 203 483 281 Naegleria gruberi small nucleolar RNP Gar1p (NAEGRDRAFT_78440), mRNA blastn 203 331 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;