RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA602115" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA602115 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3126731 3126731 PRJNA602115_P_NODE_5403_length_273_cov_1.698113_g5378_i0 PRJNA602115 5403 273 1.698113 4.63584849 Trypanosoma conorhini 83891 Euglenozoa other_Eukaryota 281 2.94e-71   NTclustered gi|1673134153|ref|XM_029369858.1| 83891 g5378 i0 86.486 56.5787545787546 259 31 94 3 14 270 52 308 Trypanosoma conorhini putative elongation factor 2 (Tco025E_02935), partial mRNA blastn 15446 281 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma conorhini
8228834 8228834 PRJNA602115_P_NODE_11847_length_201_cov_0.914286_g11822_i0 PRJNA602115 11847 201 0.914286 1.83771486 Leptomonas pyrrhocoris 157538 Euglenozoa other_Eukaryota 281 2.05e-71   NTclustered gi|1002442564|ref|XM_015805432.1| 157538 g11822 i0 92 104.442786069652 200 16 99 0 1 200 487 288 Leptomonas pyrrhocoris Trypanosoma cruzi mRNA blastn 20993 281 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leptomonas Leptomonas pyrrhocoris
10780114 10780114 PRJNA602115_P_NODE_7789_length_226_cov_1.084848_g7764_i0 PRJNA602115 7789 226 1.084848 2.45175648 Rhynchobodo ATCC50359 51334 Euglenozoa other_Eukaryota 215 2.42e-51   NTclustered gi|226347448|gb|FJ807264.1| 51334 g7764 i0 83.929 94.6991150442478 224 36 99 0 3 226 571 794 Rhynchobodo ATCC50359 elongation factor 1 alpha gene, partial cds blastn 21402 215 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Rhynchobodo Rhynchobodo ATCC50359
15171090 15171090 PRJNA602115_P_NODE_3472_length_328_cov_0.910112_g3447_i0 PRJNA602115 3472 328 0.910112 2.98516736 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 147 1.38e-30   NTclustered gi|2746716|gb|AF038379.1|AF038379 5659 g3447 i0 76.95 4.82926829268293 282 49 84 12 50 323 42 315 Leishmania amazonensis ribosomal protein S2 gene, complete cds blastn 1584 147 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania amazonensis
22252879 22252879 PRJNA602115_P_NODE_7178_length_236_cov_1.348571_g7153_i0 PRJNA602115 7178 236 1.348571 3.18262756 Leptomonas pyrrhocoris 157538 Euglenozoa other_Eukaryota 322 1.46e-83   NTclustered gi|1002447406|ref|XM_015802755.1| 157538 g7153 i0 91.525 46.5550847457627 236 16 99 3 1 234 1804 1571 Leptomonas pyrrhocoris putative mitochondrial elongation factor 2 (EF2-1) mRNA blastn 10987 322 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leptomonas Leptomonas pyrrhocoris
24801955 24801955 PRJNA602115_P_NODE_5020_length_282_cov_1.000000_g4995_i0 PRJNA602115 5020 282 1 2.82 Leishmania braziliensis 5660 Euglenozoa other_Eukaryota 217 8.72e-52   NTclustered gi|2593261525|emb|OY748520.1| 5660 g4995 i0 85.507 6.43971631205674 207 30 73 0 62 268 692417 692211 Leishmania braziliensis isolate MHOM/BR/75/M2903 genome assembly, chromosome: 34 blastn 1816 217 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania braziliensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;