RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA602115" and tax_clade = "Sar"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJNA602115 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1851510 1851510 PRJNA602115_P_NODE_6062_length_258_cov_1.380711_g6037_i0 PRJNA602115 6062 258 1.380711 3.56223438 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 289359 SAR_Eukaryotes SAR_Eukaryotes 150 8.099999999999999e-32   NTclustered gi|53829555|gb|AY582830.1| 289359 g6037 i0 96.667 5.55813953488372 90 3 35 0 169 258 1238 1149 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 ef1a gene, partial cds blastn 1434 150 1 Eukaryota Sar             Stramenopile sp. ex Nuclearia delicatula CCAP1552/1
10779917 10779917 PRJNA602115_P_NODE_10909_length_203_cov_0.901408_g10884_i0 PRJNA602115 10909 203 0.901408 1.82985824 Poterioochromonas malhamensis 88167 SAR_Eukaryotes SAR_Eukaryotes 342 9.369999999999999e-90   NTclustered gi|2088238071|ref|NC_056910.1| 88167 g10884 i0 97.044 3.49753694581281 203 6 100 0 1 203 15755 15553 Poterioochromonas malhamensis strain SZCZR2049 plastid, complete genome blastn 710 342 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
17720785 17720785 PRJNA602115_P_NODE_8254_length_217_cov_1.634615_g8229_i0 PRJNA602115 8254 217 1.634615 3.54711455 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 401 1.6499999999999994e-107   NTclustered gi|14495562|gb|L21708.2|PFA34K 5821 g8229 i0 100 99.9907834101382 217 0 100 0 1 217 811 1027 Plasmodium berghei p23-like protein mRNA, partial cds blastn 21698 401 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium berghei
20269356 20269356 PRJNA602115_P_NODE_4756_length_288_cov_1.105727_g4731_i0 PRJNA602115 4756 288 1.105727 3.18449376 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 531 2.81e-146   NTclustered gi|14495562|gb|L21708.2|PFA34K 5821 g4731 i0 100 98.1458333333333 287 0 99 0 1 287 1025 1311 Plasmodium berghei p23-like protein mRNA, partial cds blastn 28266 532 0.99812030075188 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium berghei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;