RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA602115" and tax_clade = "FCB group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA602115 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13329604 13329604 PRJNA602115_P_NODE_10031_length_206_cov_0.882759_g10006_i0 PRJNA602115 10031 206 0.882759 1.81848354 Chryseobacterium gambrini 373672 Bacteria Bacteria 353 4.41e-93   NTclustered gi|2429070341|gb|CP115857.1| 373672 g10006 i0 97.573 16.8640776699029 206 5 100 0 1 206 687666 687461 Chryseobacterium gambrini strain PL22-1A chromosome, complete genome blastn 3474 353 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium gambrini
18427593 18427593 PRJNA602115_P_NODE_10475_length_205_cov_0.881944_g10450_i0 PRJNA602115 10475 205 0.881944 1.8079852 Kaistella haifensis 421525 Bacteria Bacteria 329 7.39e-86   NTclustered gi|1519569220|gb|CP033933.1| 421525 g10450 i0 95.61 8.29756097560976 205 9 100 0 1 205 1858298 1858502 Kaistella haifensis strain G0079 chromosome, complete genome blastn 1701 329 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Kaistella Kaistella haifensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;