RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA600413" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA600413 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
573784 573784 PRJNA600413_P_NODE_25581_length_280_cov_2.978355_g24880_i0 PRJNA600413 25581 280 2.978355 8.339394 Brevinematales bacterium NS 2979017 Bacteria Bacteria 193 1.46e-44   NTclustered gi|2305034691|gb|CP053071.1| 2979017 g24880 i0 81.048 139.982142857143 248 41 87 5 1 244 668577 668332 Brevinematales bacterium NS chromosome, complete genome blastn 39195 193 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Brevinematales     Brevinematales bacterium NS
15170411 15170411 PRJNA600413_P_NODE_34772_length_242_cov_2.761658_g34071_i0 PRJNA600413 34772 242 2.761658 6.68321236 Thermospira 3024226 Bacteria Bacteria 291 4.24e-74   NTclustered gi|2621703426|emb|OY760686.1| 2202144 g34071 i0 88.75 232.623966942149 240 24 99 3 3 242 276 40 MAG: Spirochaetota bacterium isolate b615e79e-4617-45ea-95f9-f7a736470f88 genome assembly, chromosome: 1 blastn 56295 291 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
23527614 23527614 PRJNA600413_P_NODE_8739_length_504_cov_3.593407_g8046_i0 PRJNA600413 8739 504 3.593407 18.11077128 uncultured Spirochaetia bacterium 2563800 Bacteria Bacteria 778 0   NTclustered gi|2213050919|gb|ON086745.1| 2563800 g8046 i0 94.477 97.0813492063492 507 25 100 2 1 504 521 15 Uncultured Spirochaetia bacterium clone AC_BRV01 16S ribosomal RNA gene, partial sequence blastn 48929 778 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia       uncultured Spirochaetia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;