RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA600413" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA600413 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
573404 573404 PRJNA600413_P_NODE_148461_length_161_cov_0.910714_g147760_i0 PRJNA600413 148461 161 0.910714 1.46624954 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 198 1.6199999999999999e-46   NTclustered gi|575456455|gb|CP007128.1| 861299 g147760 i0 88.957 1.67080745341615 163 14 100 4 1 161 5293998 5293838 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 269 198 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
3123757 3123757 PRJNA600413_P_NODE_103423_length_167_cov_0.864407_g102722_i0 PRJNA600413 103423 167 0.864407 1.44355969 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 99 1.77e-16   NTclustered gi|2874253938|emb|OY970263.1| 412054 g102722 i0 86.667 0.538922155688623 90 10 53 2 58 146 88156 88068 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 90 99 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
17150755 17150755 PRJNA600413_P_NODE_126934_length_164_cov_0.886957_g126233_i0 PRJNA600413 126934 164 0.886957 1.45460948 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 276 7.46e-70   NTclustered gi|2874253789|emb|OY969773.1| 412054 g126233 i0 96.97 134.682926829268 165 3 100 2 1 164 421855 422018 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 22088 276 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;