RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA600413" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA600413 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8227742 8227742 PRJNA600413_P_NODE_53887_length_203_cov_1.324675_g53186_i0 PRJNA600413 53887 203 1.324675 2.68909025 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 348 2.0100000000000006e-91   NTclustered gi|2651357788|gb|PP174303.1| 41631 g53186 i0 97.537 70.8177339901478 203 5 100 0 1 203 3797 3595 Colpoda sp. isolate CIL1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 14376 348 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
17719617 17719617 PRJNA600413_P_NODE_123934_length_164_cov_1.173913_g123233_i0 PRJNA600413 123934 164 1.173913 1.92521732 Ciliophora 5878 SAR_Eukaryotes SAR_Eukaryotes 281 1.6000000000000001e-71   NTclustered gi|4730939|gb|AF060454.1| 88563 g123233 i0 97.561 96.469512195122 164 4 100 0 1 164 250 413 Platyophrya vorax small subunit ribosomal RNA gene, complete sequence blastn 15821 281 1 Eukaryota Sar   Ciliophora Colpodea Cyrtolophosidida Platyophryidae Platyophrya Platyophrya vorax

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;