RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA600413" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA600413 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5678727 5678727 PRJNA600413_P_NODE_76205_length_182_cov_1.533835_g75504_i0 PRJNA600413 76205 182 1.533835 2.7915797 Anaerolineae bacterium 2052143 Bacteria Bacteria 130 6.95e-26   NTclustered gi|2107864099|gb|CP070818.1| 2052143 g75504 i0 89.32 5.6043956043956 103 11 57 0 1 103 3311493 3311391 MAG: Anaerolineae bacterium isolate bin1159 chromosome blastn 1020 130 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium
8225992 8225992 PRJNA600413_P_NODE_105287_length_167_cov_0.864407_g104586_i0 PRJNA600413 105287 167 0.864407 1.44355969 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 52.8 0.014   NTclustered gi|2621706807|emb|OY764869.1| 2026734 g104586 i0 100 0.167664670658683 28 0 17 0 26 53 19638 19665 MAG: Dehalococcoidia bacterium isolate 68cf78b7-8a41-43a5-8848-46054f5a18e3 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
22250345 22250345 PRJNA600413_P_NODE_131858_length_163_cov_0.894737_g131157_i0 PRJNA600413 131858 163 0.894737 1.45842131 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 139 1.01e-28   NTclustered gi|2874253788|emb|OY969772.1| 1672391 g131157 i0 100 47.8527607361963 75 0 46 0 70 144 672917 672991 MAG: uncultured Chloroflexia bacterium isolate MFD02416.bin.2.42 genome assembly, chromosome: 1 blastn 7800 139 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;