contig_metadata
5 rows where analysis = "blastn", bioproject = "PRJNA600413" and tax_phylum = "Campylobacterota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1848766 | 1848766 | PRJNA600413_P_NODE_119722_length_165_cov_0.879310_g119021_i0 | PRJNA600413 | 119722 | 165 | 0.87931 | 1.4508615 | Wolinella succinogenes | 844 | Bacteria | Bacteria | 296 | 5.77e-76 | NTclustered | gi|34483865|emb|BX571662.1| | 844 | g119021 | i0 | 99.387 | 1.97575757575758 | 163 | 1 | 99 | 0 | 3 | 165 | 314757 | 314919 | Wolinella succinogenes, complete genome; segment 6/7 | blastn | 326 | 296 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Helicobacteraceae | Wolinella | Wolinella succinogenes | ||
| 3123973 | 3123973 | PRJNA600413_P_NODE_116003_length_165_cov_1.517241_g115302_i0 | PRJNA600413 | 116003 | 165 | 1.517241 | 2.50344765 | Campylobacter concisus | 199 | Bacteria | Bacteria | 176 | 7.85e-40 | NTclustered | gi|2700477995|gb|CP147775.1| | 199 | g115302 | i0 | 87.5 | 3.75757575757576 | 152 | 19 | 92 | 0 | 3 | 154 | 1682126 | 1682277 | Campylobacter concisus strain RMIT-O23 chromosome | blastn | 620 | 176 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter concisus | ||
| 10779244 | 10779244 | PRJNA600413_P_NODE_73149_length_184_cov_1.511111_g72448_i0 | PRJNA600413 | 73149 | 184 | 1.511111 | 2.78044424 | Campylobacter showae | 204 | Bacteria | Bacteria | 292 | 8.490000000000001e-75 | NTclustered | gi|1483583529|emb|LT631453.1| | 204 | g72448 | i0 | 95.161 | 4.05434782608696 | 186 | 7 | 100 | 2 | 1 | 184 | 767020 | 766835 | Campylobacter showae strain B91_SCBr genome assembly, chromosome: I | blastn | 746 | 292 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter showae | ||
| 17152920 | 17152920 | PRJNA600413_P_NODE_89074_length_174_cov_1.632000_g88373_i0 | PRJNA600413 | 89074 | 174 | 1.632 | 2.83968 | Campylobacter gracilis | 824 | Bacteria | Bacteria | 255 | 1.04e-63 | NTclustered | gi|909717139|gb|CP012196.1| | 824 | g88373 | i0 | 93.143 | 2.01149425287356 | 175 | 10 | 99 | 2 | 2 | 174 | 2193387 | 2193213 | Campylobacter gracilis strain ATCC 33236, complete genome | blastn | 350 | 255 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter gracilis | ||
| 20269223 | 20269223 | PRJNA600413_P_NODE_96976_length_169_cov_6.258333_g96275_i0 | PRJNA600413 | 96976 | 169 | 6.258333 | 10.57658277 | Campylobacterales | 213849 | Bacteria | Bacteria | 313 | 5.859999999999999e-81 | NTclustered | gi|385731235|gb|JQ743035.1| | 196 | g96275 | i0 | 100 | 130 | 169 | 0 | 100 | 0 | 1 | 169 | 306 | 474 | Campylobacter fetus strain campy-a11 16S ribosomal RNA gene, partial sequence | blastn | 21970 | 313 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter fetus |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;