RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA600413" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 5 ✖

bioproject 1

  • PRJNA600413 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1848906 1848906 PRJNA600413_P_NODE_129662_length_163_cov_2.052632_g128961_i0 PRJNA600413 129662 163 2.052632 3.34579016 Coccomyxa subellipsoidea 248742 Plants Plants 302 1.22e-77   NTclustered gi|1360638125|gb|AC277041.1| 574566 g128961 i0 100 97.8282208588957 163 0 100 0 1 163 39519 39681 Coccomyxa subellipsoidea C-169 clone FAHX05-A01, complete sequence blastn 15946 302 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
8226376 8226376 PRJNA600413_P_NODE_131027_length_163_cov_1.070175_g130326_i0 PRJNA600413 131027 163 1.070175 1.74438525 Chlamydomonas reinhardtii 3055 Plants Plants 52.8 0.014   NTclustered gi|2082239373|ref|XM_001699987.2| 3055 g130326 i0 100 0.171779141104294 28 0 17 0 111 138 138 111 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_02g097900v5), mRNA blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
12621648 12621648 PRJNA600413_P_NODE_81470_length_179_cov_1.176923_g80769_i0 PRJNA600413 81470 179 1.176923 2.10669217 Chlamydomonadaceae 3051 Plants Plants 76.8 9e-10   NTclustered gi|17028256|gb|L42859.1|CRECPRGOL 47905 g80769 i0 87.879 1.10614525139665 66 7 37 1 26 91 491 555 Chlamydomonas mutabilis chloroplast large-subunit ribosomal RNA (rrnL), site-specific DNA endonuclease I-CmuI gene blastn 198 76.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas mutabilis
13896355 13896355 PRJNA600413_P_NODE_50951_length_207_cov_2.240506_g50250_i0 PRJNA600413 50951 207 2.240506 4.63784742 Coccomyxa 41891 Plants Plants 383 5.65e-102   NTclustered gi|1601875646|gb|MK694759.1| 2315456 g50250 i0 100 97 207 0 100 0 1 207 4095 3889 Coccomyxa sp. Obi small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 20079 383 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa sp. Obi
23526599 23526599 PRJNA600413_P_NODE_39899_length_228_cov_2.346369_g39198_i0 PRJNA600413 39899 228 2.346369 5.34972132 Coccomyxa subellipsoidea 248742 Plants Plants 399 6.299999999999999e-107   NTclustered gi|1360638125|gb|AC277041.1| 574566 g39198 i0 98.246 3.12719298245614 228 4 100 0 1 228 39678 39905 Coccomyxa subellipsoidea C-169 clone FAHX05-A01, complete sequence blastn 713 399 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;