RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA600413" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA600413 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5677485 5677485 PRJNA600413_P_NODE_23525_length_293_cov_2.090164_g22824_i0 PRJNA600413 23525 293 2.090164 6.12418052 Didymium trachysporum 2058443 Evosea other_Eukaryota 436 6.419999999999999e-118   NTclustered gi|1304517520|gb|MG662513.1| 2058443 g22824 i0 93.814 97.1467576791809 291 17 99 1 3 293 186 475 Didymium trachysporum voucher MA81679 small subunit ribosomal RNA gene, partial sequence blastn 28464 436 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium trachysporum
12053113 12053113 PRJNA600413_P_NODE_28730_length_265_cov_1.250000_g28029_i0 PRJNA600413 28730 265 1.25 3.3125 Rhizamoeba saxonica 200886 Tubulinea other_Eukaryota 250 8e-62   NTclustered gi|300078497|gb|GU001159.1| 200886 g28029 i0 83.774 4.73584905660377 265 41 100 1 1 265 2661 2923 Rhizamoeba saxonica 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1255 250 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba saxonica
17153071 17153071 PRJNA600413_P_NODE_96994_length_169_cov_4.308333_g96293_i0 PRJNA600413 96994 169 4.308333 7.28108277 Cavenderia fasciculata 261658 Evosea other_Eukaryota 54.7 0.004   NTclustered gi|470272783|ref|XM_004363171.1| 261658 g96293 i0 100 0.171597633136095 29 0 17 0 139 167 621 593 Cavenderia fasciculata uncharacterized protein (DFA_03626), partial mRNA blastn 29 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
20976151 20976151 PRJNA600413_P_NODE_25817_length_279_cov_1.773913_g25116_i0 PRJNA600413 25817 279 1.773913 4.94921727 Lamproderma album 1115704 Evosea other_Eukaryota 324 4.93e-84   NTclustered gi|358628234|gb|JQ031971.1| 1115704 g25116 i0 90.4 90.752688172043 250 19 89 5 32 279 2386 2632 Lamproderma album voucher MM37151 18S ribosomal RNA gene, partial sequence blastn 25320 324 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Stemonitida Stemonitidae Lamproderma Lamproderma album

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;