RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA599208" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA599208 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4399974 4399974 PRJNA599208_P_NODE_8164_length_252_cov_1.451163_g7968_i0 PRJNA599208 8164 252 1.451163 3.65693076 Ctena cf. galapagana NHMUK 20210086 2892552 Mollusca Mollusca 134 7.93e-27   NTclustered gi|2129023951|gb|OL361786.1| 2892552 g7968 i0 90.909 8.95634920634921 99 9 39 0 149 247 4050 4148 Ctena cf. galapagana NHMUK 20210086 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 2257 134 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Lucinida Lucinidae Ctena Ctena cf. galapagana NHMUK 20210086
22249434 22249434 PRJNA599208_P_NODE_7938_length_256_cov_5.146119_g7742_i0 PRJNA599208 7938 256 5.146119 13.17406464 Geomalacus anguiformis 1505099 Mollusca Mollusca 472 1.51e-128   NTclustered gi|1511255144|gb|MK152514.1| 1505099 g7742 i0 100 153.4296875 255 0 99 0 1 255 73 327 Geomalacus anguiformis isolate USCM:6251 small subunit ribosomal RNA gene, partial sequence blastn 39278 472 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Arionidae Geomalacus Geomalacus anguiformis
24798410 24798410 PRJNA599208_P_NODE_15020_length_161_cov_1.879032_g14824_i0 PRJNA599208 15020 161 1.879032 3.02524152 Bradybaena similaris 145626 Mollusca Mollusca 255 9.5e-64   NTclustered gi|2913001816|dbj|AP039609.1| 145626 g14824 i0 95.597 168.173913043478 159 7 99 0 3 161 1273 1431 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 28, sequence blastn 27076 255 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;