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contig_metadata

31 rows where analysis = "blastn", bioproject = "PRJNA599208" and tax_clade = "Embryophyta"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 31 ✖

bioproject 1

  • PRJNA599208 · 31 ✖

analysis 1

  • blastn · 31 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1848008 1848008 PRJNA599208_P_NODE_4122_length_411_cov_18.106952_g3928_i0 PRJNA599208 4122 411 18.106952 74.41957272 Bupleurum falcatum 46367 Plants Plants 732 0   NTclustered gi|2571153582|gb|OR493979.1| 46367 g3928 i0 98.783 105.377128953771 411 5 100 0 1 411 5388 5798 Bupleurum falcatum voucher 2009100601 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 43310 732 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Apiales Apiaceae Bupleurum Bupleurum falcatum
2416769 2416769 PRJNA599208_P_NODE_15322_length_159_cov_1.598361_g15126_i0 PRJNA599208 15322 159 1.598361 2.54139399 Eukaryota 2759 Plants Plants 54.7 0.004   NTclustered gi|2918395482|emb|OZ238158.1| 98722 g15126 i0 100 1.28930817610063 29 0 18 0 14 42 12031680 12031708 Jacobaea vulgaris genome assembly, chromosome: 10 blastn 205 54.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asterales Asteraceae Jacobaea Jacobaea vulgaris
3692952 3692952 PRJNA599208_P_NODE_4123_length_411_cov_12.566845_g3929_i0 PRJNA599208 4123 411 12.566845 51.64973295 Poaceae 4479 Plants Plants 710 0   NTclustered gi|2922467232|ref|XR_011756584.1| 4522 g3929 i0 97.81 2398.56447688564 411 9 100 0 1 411 2957 3367 PREDICTED: Lolium perenne 28S ribosomal RNA (LOC139838740), rRNA blastn 985810 715 0.993006993006993 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Lolium Lolium perenne
4969560 4969560 PRJNA599208_P_NODE_16224_length_153_cov_1.853448_g16028_i0 PRJNA599208 16224 153 1.853448 2.83577544 Magnoliopsida 3398 Plants Plants 250 4.14e-62   NTclustered gi|2850818837|gb|PQ578011.1| 4679 g16028 i0 96.078 13.1372549019608 153 6 100 0 1 153 74 226 Allium cepa voucher 2024-Aug-Princess-Victoria-658 large subunit ribosomal RNA gene, partial sequence blastn 2010 250 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asparagales Amaryllidaceae Allium Allium cepa
4969617 4969617 PRJNA599208_P_NODE_7684_length_263_cov_2.783186_g7488_i0 PRJNA599208 7684 263 2.783186 7.31977918 Magnoliopsida 3398 Plants Plants 481 2.58e-131   NTclustered gi|1836981918|gb|MT361980.1| 3483 g7488 i0 99.62 121.665399239544 263 1 100 0 1 263 367907 368169 Cannabis sativa mitochondrion, complete genome blastn 31998 481 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Cannabaceae Cannabis Cannabis sativa
5675918 5675918 PRJNA599208_P_NODE_14045_length_169_cov_1.454545_g13849_i0 PRJNA599208 14045 169 1.454545 2.45818105 Cicer arietinum 3827 Plants Plants 313 5.859999999999999e-81   NTclustered gi|1535879514|ref|XM_027334619.1| 3827 g13849 i0 100 99.9881656804734 169 0 100 0 1 169 738 906 PREDICTED: Cicer arietinum uncharacterized LOC113786646 (LOC113786646), mRNA blastn 16898 313 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Cicer Cicer arietinum
5676044 5676044 PRJNA599208_P_NODE_9825_length_219_cov_1.565934_g9629_i0 PRJNA599208 9825 219 1.565934 3.42939546 Leptochilus henryi 493393 Plants Plants 185 1.8299999999999994e-42   NTclustered gi|2050223768|gb|MZ360988.1| 493393 g9629 i0 82.353 100.876712328767 221 32 100 6 1 219 5336 5551 Leptochilus henryi voucher X.C. Zhang 7487 (PE) small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 22092 185 1 Eukaryota Embryophyta Viridiplantae Streptophyta Polypodiopsida Polypodiales Polypodiaceae Leptochilus Leptochilus henryi
7519367 7519367 PRJNA599208_P_NODE_8126_length_252_cov_4.386047_g7930_i0 PRJNA599208 8126 252 4.386047 11.05283844 root 1 Root_unresolved Root_unresolved 231 2.73e-56   NTclustered gi|32994295|dbj|AK109086.1| 39947 g7930 i0 83.588 230.011904761905 262 27 100 12 1 252 532 277 Oryza sativa Japonica Group cDNA clone:002-154-H10, full insert sequence blastn 57963 231 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
8225316 8225316 PRJNA599208_P_NODE_10807_length_204_cov_1.604790_g10611_i0 PRJNA599208 10807 204 1.60479 3.2737716 Vigna mungo 3915 Plants Plants 54.7 0.005   NTclustered gi|2688570838|gb|CP144689.1| 3915 g10611 i0 100 1.27941176470588 29 0 14 0 55 83 840379 840351 Vigna mungo isolate Urdbean chloroplast, partial sequence blastn 261 54.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Vigna Vigna mungo
8225454 8225454 PRJNA599208_P_NODE_6027_length_313_cov_8.101449_g5831_i0 PRJNA599208 6027 313 8.101449 25.35753537 Kuruna debilis 1531501 Plants Plants 459 1.48e-124   NTclustered gi|1042708630|gb|KU569969.1| 1531501 g5831 i0 93.038 553.862619808307 316 19 100 2 1 313 95416 95731 Kuruna debilis voucher ISC<USA-IA>:Attigala 123-5 plastid, partial genome blastn 173359 459 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Kuruna Kuruna debilis
8794271 8794271 PRJNA599208_P_NODE_5507_length_336_cov_1.545151_g5311_i0 PRJNA599208 5507 336 1.545151 5.19170736 Magnoliopsida 3398 Plants Plants 616 8.96e-172   NTclustered gi|929046211|gb|KR059940.1| 3483 g5311 i0 99.702 113.535714285714 336 1 100 0 1 336 367159 367494 Cannabis sativa cultivar Carmagnola mitochondrion, complete genome blastn 38148 621 0.99194847020934 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Cannabaceae Cannabis Cannabis sativa
8794286 8794286 PRJNA599208_P_NODE_6827_length_287_cov_7.220000_g6631_i0 PRJNA599208 6827 287 7.22 20.7214 Citrus 2706 Plants Plants 514 2.82e-141   NTclustered gi|18057|emb|X03641.1| 2708 g6631 i0 99.296 98.8397212543554 284 2 99 0 1 284 1192 1475 Citrus limon 26S ribosomal RNA gene 3' region blastn 28367 514 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Sapindales Rutaceae Citrus Citrus x limon
12051386 12051386 PRJNA599208_P_NODE_16830_length_150_cov_0.867257_g16634_i0 PRJNA599208 16830 150 0.867257 1.3008855 Triticum aestivum 4565 Plants Plants 267 4.009999999999999e-67   NTclustered gi|300681466|emb|FN564430.1| 4565 g16634 i0 98.667 354.906666666667 150 2 100 0 1 150 1290455 1290604 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0464b blastn 53236 267 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
13895464 13895464 PRJNA599208_P_NODE_12271_length_185_cov_3.101351_g12075_i0 PRJNA599208 12271 185 3.101351 5.73749935 Lauraceae 3433 Plants Plants 342 8.369999999999999e-90   NTclustered gi|1858740925|gb|MT628628.1| 3435 g12075 i0 100 101.037837837838 185 0 100 0 1 185 4552 4736 Persea americana voucher YL01 sequence blastn 18692 342 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Laurales Lauraceae Persea Persea americana
14601084 14601084 PRJNA599208_P_NODE_14372_length_167_cov_1.007692_g14176_i0 PRJNA599208 14372 167 1.007692 1.68284564 Camellia sinensis 4442 Plants Plants 62.1 2.33e-5   NTclustered gi|1585762452|ref|XR_003634876.1| 4442 g14176 i0 100 0.197604790419162 33 0 20 0 112 144 3061 3029 PREDICTED: Camellia sinensis 28S ribosomal RNA (LOC114278330), rRNA blastn 33 62.1 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Ericales Theaceae Camellia Camellia sinensis
16444269 16444269 PRJNA599208_P_NODE_3873_length_428_cov_24.800512_g3679_i0 PRJNA599208 3873 428 24.800512 106.14619136 Allium 4678 Plants Plants 769 0   NTclustered gi|780981384|gb|KM117265.1| 4679 g3679 i0 99.065 99.7570093457944 428 4 100 0 1 428 2462 2889 Allium cepa 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S ribosomal RNA gene, complete sequence blastn 42696 769 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asparagales Amaryllidaceae Allium Allium cepa
17719384 17719384 PRJNA599208_P_NODE_8754_length_238_cov_4.159204_g8558_i0 PRJNA599208 8754 238 4.159204 9.89890552 Magnoliopsida 3398 Plants Plants 409 1.1e-109   NTclustered gi|289065026|ref|NC_013816.1| 4529 g8558 i0 99.119 150.731092436975 227 2 95 0 12 238 306964 307190 Oryza rufipogon mitochondrion, complete genome blastn 35874 409 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza rufipogon
18424169 18424169 PRJNA599208_P_NODE_15515_length_158_cov_1.132231_g15319_i0 PRJNA599208 15515 158 1.132231 1.78892498 Citrus sinensis 2711 Plants Plants 122 9.809999999999999e-24   NTclustered gi|527048053|tpe|HG323804.1| 2711 g15319 i0 96 61.3481012658228 75 3 47 0 25 99 4 78 TPA: Citrus sinensis SRP RNA for signal recognition particle RNA blastn 9693 122 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Sapindales Rutaceae Citrus Citrus sinensis
18992859 18992859 PRJNA599208_P_NODE_2555_length_557_cov_51.228846_g2372_i0 PRJNA599208 2555 557 51.228846 285.34467222 Eukaryota 2759 Plants Plants 952 0   NTclustered gi|1878849207|gb|MT796543.1| 3512 g2372 i0 97.496 100.357271095153 559 10 100 3 1 557 1658 2214 Quercus rubra isolate DM598 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 55899 952 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Fagaceae Quercus Quercus rubra
18992860 18992860 PRJNA599208_P_NODE_2835_length_525_cov_8.387295_g2648_i0 PRJNA599208 2835 525 8.387295 44.03329875 Magnoliopsida 3398 Plants Plants 952 0   NTclustered gi|2289978102|gb|MZ520998.1| 4072 g2648 i0 99.427 167.441904761905 524 3 100 0 1 524 59561 59038 Capsicum annuum mitochondrion, complete genome blastn 87907 952 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Capsicum Capsicum annuum
18992906 18992906 PRJNA599208_P_NODE_7095_length_279_cov_12.851240_g6899_i0 PRJNA599208 7095 279 12.85124 35.8549596 Brassica 3705 Plants Plants 71.3 7.09e-8   NTclustered gi|2258127516|ref|XR_007331011.1| 3708 g6899 i0 74.699 11.9605734767025 166 39 58 3 117 279 3007 2842 PREDICTED: Brassica napus 28S ribosomal RNA (LOC125596366), rRNA blastn 3337 71.3 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Brassica Brassica napus
20267910 20267910 PRJNA599208_P_NODE_16336_length_152_cov_40.904348_g16140_i0 PRJNA599208 16336 152 40.904348 62.17460896 Magnoliopsida 3398 Plants Plants 276 6.770000000000001e-70   NTclustered gi|5163134|gb|AF098419.1|AF098419 3513 g16140 i0 99.342 100 152 1 100 0 1 152 383 232 Quercus alba internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence blastn 15200 276 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Fagaceae Quercus Quercus alba
20267979 20267979 PRJNA599208_P_NODE_7536_length_267_cov_2.595652_g7340_i0 PRJNA599208 7536 267 2.595652 6.93039084 Allium 4678 Plants Plants 494 3.38e-135   NTclustered gi|166203508|gb|EU256494.1| 4679 g7340 i0 100 801.513108614232 267 0 100 0 1 267 410 144 Allium cepa clone ACIGS4 25S ribosomal RNA gene, partial sequence; intergenic spacer, complete sequence; and 18S ribosomal RNA gene, partial sequence blastn 214004 494 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asparagales Amaryllidaceae Allium Allium cepa
20974442 20974442 PRJNA599208_P_NODE_10377_length_210_cov_2.208092_g10181_i0 PRJNA599208 10377 210 2.208092 4.6369932 Allium sativum 4682 Plants Plants 388 1.24e-103   NTclustered gi|2221770634|gb|MK770772.1| 4682 g10181 i0 100 100.628571428571 210 0 100 0 1 210 5671 5462 Allium sativum 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S ribosomal RNA gene, complete sequence blastn 21132 388 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asparagales Amaryllidaceae Allium Allium sativum
21543322 21543322 PRJNA599208_P_NODE_12257_length_185_cov_6.817568_g12061_i0 PRJNA599208 12257 185 6.817568 12.6125008 Fabaceae 3803 Plants Plants 309 8.49e-80   NTclustered gi|2027446350|ref|XR_005890558.1| 3847 g12061 i0 97.765 97.1459459459459 179 4 97 0 7 185 259 81 PREDICTED: Glycine max 28S ribosomal RNA (LOC121174465), rRNA blastn 17972 309 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Glycine Glycine max
21543325 21543325 PRJNA599208_P_NODE_12617_length_182_cov_1.620690_g12421_i0 PRJNA599208 12617 182 1.62069 2.9496558 Vitis 3603 Plants Plants 326 8.260000000000001e-85   NTclustered gi|19919648|gb|AF479207.1| 3605 g12421 i0 98.901 100.021978021978 182 2 100 0 1 182 3124 3305 Vitis aestivalis 26S ribosomal RNA gene, complete sequence blastn 18204 326 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Vitales Vitaceae Vitis Vitis aestivalis
22818601 22818601 PRJNA599208_P_NODE_1158_length_914_cov_8.909920_g1046_i0 PRJNA599208 1158 914 8.90992 81.4366688 Magnoliopsida 3398 Plants Plants 1415 0   NTclustered gi|2638567701|gb|MN864139.1| 4054 g1046 i0 94.748 192.052516411379 914 40 100 7 1 914 105866 106771 Panax ginseng isolate Hamyang50y plastid, complete genome blastn 175536 1421 0.995777621393385 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Apiales Araliaceae Panax Panax ginseng
22818626 22818626 PRJNA599208_P_NODE_16038_length_154_cov_2.358974_g15842_i0 PRJNA599208 16038 154 2.358974 3.63281996 Allium 4678 Plants Plants 279 5.33e-71   NTclustered gi|2476249364|gb|OP617675.1| 4679 g15842 i0 99.351 108.058441558442 154 1 100 0 1 154 4821 4974 Allium cepa 26S-18S ribosomal RNA intergenic spacer, partial sequence; and external transcribed spacer, 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S large subunit ribosomal RNA gene, complete sequence blastn 16641 279 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asparagales Amaryllidaceae Allium Allium cepa
22818702 22818702 PRJNA599208_P_NODE_7058_length_280_cov_12.362140_g6862_i0 PRJNA599208 7058 280 12.36214 34.613992 Glycine 3846 Plants Plants 494 3.57e-135   NTclustered gi|2027446350|ref|XR_005890558.1| 3847 g6862 i0 98.917 98.8928571428571 277 2 99 1 1 277 3117 3392 PREDICTED: Glycine max 28S ribosomal RNA (LOC121174465), rRNA blastn 27690 494 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Glycine Glycine max
24798391 24798391 PRJNA599208_P_NODE_13840_length_171_cov_1.000000_g13644_i0 PRJNA599208 13840 171 1 1.71 Medicago truncatula 3880 Plants Plants 110 8.38e-20   NTclustered gi|50345145|gb|AC136507.19| 3880 g13644 i0 82.308 46.1228070175439 130 19 75 4 17 144 21797 21924 Medicago truncatula clone mth2-24o19, complete sequence blastn 7887 110 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Medicago Medicago truncatula
25367872 25367872 PRJNA599208_P_NODE_8700_length_239_cov_14.801980_g8504_i0 PRJNA599208 8700 239 14.80198 35.3767322 Marchantiopsida 186770 Plants Plants 145 3.4499999999999996e-30   NTclustered gi|2438917936|emb|OX419765.1| 56931 g8504 i0 84.564 88.0585774058577 149 19 62 4 92 239 86906 87051 Lunularia cruciata genome assembly, organelle: plastid:chloroplast blastn 21046 145 1 Eukaryota Embryophyta Viridiplantae Streptophyta Marchantiopsida Lunulariales Lunulariaceae Lunularia Lunularia cruciata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;