RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA599026" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA599026 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
571953 571953 PRJNA599026_S_NODE_61061_length_164_cov_0.886957_g60605_i0 PRJNA599026 61061 164 0.886957 1.45460948 Pseudodesulfovibrio indicus 1716143 Bacteria Bacteria 56.5 0.001   NTclustered gi|998152336|gb|CP014206.1| 1716143 g60605 i0 89.362 0.463414634146341 47 1 29 3 19 65 3366568 3366526 Pseudodesulfovibrio indicus strain J2 chromosome, complete genome blastn 76 56.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio indicus
10069785 10069785 PRJNA599026_S_NODE_31488_length_198_cov_1.369128_g31032_i0 PRJNA599026 31488 198 1.369128 2.71087344 root 1 Root_unresolved Root_unresolved 178 2.71e-40   NTclustered gi|85720936|gb|CP000252.1| 56780 g31032 i0 85.799 156.272727272727 169 23 85 1 30 198 742330 742497 Syntrophus aciditrophicus SB, complete genome blastn 30942 178 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Syntrophaceae Syntrophus Syntrophus aciditrophicus
13325883 13325883 PRJNA599026_S_NODE_59351_length_164_cov_1.547826_g58895_i0 PRJNA599026 59351 164 1.547826 2.53843464 uncultured Desulfobacter sp. 240139 Bacteria Bacteria 63.9 6.33e-6   NTclustered gi|2621717585|emb|OY775937.1| 240139 g58895 i0 87.273 4.70731707317073 55 7 34 0 1 55 1216100 1216046 MAG: uncultured Desulfobacter sp. isolate 6579293f-26f5-4e71-a9db-d48b61c722da genome assembly, chromosome: 1 blastn 772 63.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfobacter uncultured Desulfobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;