RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA599026" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA599026 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12050900 12050900 PRJNA599026_S_NODE_41750_length_179_cov_1.176923_g41294_i0 PRJNA599026 41750 179 1.176923 2.10669217 Brachionus calyciflorus 104777 Rotifera other_Eukaryota 154 4.04e-33   NTclustered gi|2105975276|gb|MZ706949.1| 104777 g41294 i0 82.941 87.1173184357542 170 29 95 0 10 179 27007 26838 Brachionus calyciflorus chromosome I mitochondrion, complete sequence blastn 15594 154 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
18423695 18423695 PRJNA599026_S_NODE_41015_length_180_cov_1.427481_g40559_i0 PRJNA599026 41015 180 1.427481 2.5694658 Rotaria rotatoria 231624 Rotifera other_Eukaryota 237 3.9300000000000005e-58   NTclustered gi|270267490|ref|NC_013568.1| 231624 g40559 i0 91.329 5.03333333333333 173 15 96 0 8 180 2227 2399 Rotaria rotatoria mitochondrion, complete genome blastn 906 237 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria rotatoria
20973719 20973719 PRJNA599026_S_NODE_1897_length_685_cov_6.954403_g1519_i0 PRJNA599026 1897 685 6.954403 47.63766055 Asplanchna sp. 3231738 Rotifera other_Eukaryota 388 4.59e-103   NTclustered gi|2778092479|gb|PP988071.1| 3231738 g1519 i0 78.539 22.4905109489051 657 93 92 40 45 677 1774 2406 Asplanchna sp. chromosome I mitochondrion, complete sequence blastn 15406 388 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Asplanchnidae Asplanchna Asplanchna sp.
22248676 22248676 PRJNA599026_S_NODE_27718_length_207_cov_1.613924_g27262_i0 PRJNA599026 27718 207 1.613924 3.34082268 Brachionus plicatilis 10195 Rotifera other_Eukaryota 128 2.93e-25   NTclustered gi|218117251|emb|AM980954.1| 10195 g27262 i0 86.842 1.65700483091787 114 15 55 0 2 115 114 1 Brachionus plicatilis partial mRNA for 60S ribosomal protein L37a, (RPL37a gene) blastn 343 128 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus plicatilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;