RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA599026" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA599026 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17149267 17149267 PRJNA599026_S_NODE_35034_length_191_cov_0.795775_g34578_i0 PRJNA599026 35034 191 0.795775 1.51993025 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 54.7 0.005   NTclustered gi|2319593202|ref|XM_001583948.2| 412133 g34578 i0 96.875 0.167539267015707 32 1 17 0 145 176 5250 5219 Trichomonas vaginalis G3 protein serine/threonine kinase protein (TVAGG3_0528790), partial mRNA blastn 32 54.7 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
23524394 23524394 PRJNA599026_S_NODE_64219_length_163_cov_0.894737_g63763_i0 PRJNA599026 64219 163 0.894737 1.45842131 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 302 1.22e-77   NTclustered gi|2319624471|ref|XM_051224421.1| 412133 g63763 i0 100 100 163 0 100 0 1 163 591 429 Trichomonas vaginalis G3 protein of unknown function, DUF4106 family (TVAGG3_0144350), partial mRNA blastn 16300 302 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;