RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA599026" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA599026 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10775733 10775733 PRJNA599026_S_NODE_16249_length_252_cov_1.694581_g15793_i0 PRJNA599026 16249 252 1.694581 4.27034412 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 99 2.89e-16   NTclustered gi|698803347|ref|XM_009836401.1| 112090 g15793 i0 85.714 1.16666666666667 98 9 37 4 25 118 370 466 Aphanomyces astaci ABC transporter E family member 2, variant 1 mRNA blastn 294 99 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
13325542 13325542 PRJNA599026_S_NODE_331_length_1412_cov_5.009538_g211_i0 PRJNA599026 331 1412 5.009538 70.73467656 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 132 1.81e-25   NTclustered gi|669150833|ref|XM_008612757.1| 1156394 g211 i0 81.366 2.85764872521246 161 30 11 0 1225 1385 250 90 Saprolegnia diclina VS20 dihydrolipoyl dehydrogenase mRNA blastn 4035 132 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
18423448 18423448 PRJNA599026_S_NODE_21215_length_228_cov_1.000000_g20759_i0 PRJNA599026 21215 228 1 2.28 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 278 3.0800000000000004e-70   NTclustered gi|325194231|emb|FR825088.1| 890382 g20759 i0 88.696 1.33771929824561 230 22 100 3 1 228 1023 1250 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 305 278 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;