RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA599026" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA599026 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1847869 1847869 PRJNA599026_S_NODE_8782_length_327_cov_2.025180_g8326_i0 PRJNA599026 8782 327 2.02518 6.6223386 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.031   NTclustered gi|1845970304|ref|NM_001380347.2| 6239 g8326 i0 100 0.342507645259939 28 0 9 0 54 81 397 370 Caenorhabditis elegans Zinc transporter ZIP3 (zipt-2.4), mRNA blastn 112 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
19697922 19697922 PRJNA599026_S_NODE_17236_length_246_cov_4.715736_g16780_i0 PRJNA599026 17236 246 4.715736 11.60071056 Strongyloides ratti 34506 Nematoda Nematoda 243 1.23e-59   NTclustered gi|1376144465|ref|XM_024652690.1| 34506 g16780 i0 86.283 91.4593495934959 226 27 91 4 1 224 255 32 Strongyloides ratti Actin, alpha cardiac muscle 1 (SRAE_2000170700), partial mRNA blastn 22499 243 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;