RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA599026" and tax_phylum = "Chlorophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA599026 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17719068 17719068 PRJNA599026_S_NODE_32914_length_195_cov_1.273973_g32458_i0 PRJNA599026 32914 195 1.273973 2.48424735 root 1 Root_unresolved Root_unresolved 62.1 2.8e-5   NTclustered gi|612391972|ref|XM_007511445.1| 41875 g32458 i0 97.222 2.30769230769231 36 1 18 0 2 37 312 277 Bathycoccus prasinos unknown protein (Bathy08g04040), partial mRNA blastn 450 62.1 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Bathycoccaceae Bathycoccus Bathycoccus prasinos
18423343 18423343 PRJNA599026_S_NODE_10975_length_296_cov_15.194332_g10519_i0 PRJNA599026 10975 296 15.194332 44.97522272 Chloropicon roscoffensis 1461544 Plants Plants 355 1.87e-93   NTclustered gi|2863412631|gb|CP145450.1| 1461544 g10519 i0 89.855 91.4594594594595 276 28 93 0 21 296 330782 330507 Chloropicon roscoffensis strain CCMP1998 chromosome 10 blastn 27072 355 1 Eukaryota   Viridiplantae Chlorophyta Chloropicophyceae Chloropicales Chloropicaceae Chloropicon Chloropicon roscoffensis
22248758 22248758 PRJNA599026_S_NODE_3498_length_509_cov_2.076087_g3050_i0 PRJNA599026 3498 509 2.076087 10.56728283 Monoraphidium neglectum 145388 Plants Plants 106 3.77e-18   NTclustered gi|926766573|ref|XM_014036885.1| 145388 g3050 i0 76.233 0.666011787819253 223 39 41 9 8 217 247 468 Monoraphidium neglectum tyrosyl-tRNA synthetase mRNA blastn 339 106 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;