RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA599026" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA599026 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4969374 4969374 PRJNA599026_S_NODE_40924_length_180_cov_1.557252_g40468_i0 PRJNA599026 40924 180 1.557252 2.8030536 Bdellovibrio 958 Bacteria Bacteria 54.7 0.004   NTclustered gi|2771112236|gb|CP160486.1| 959 g40468 i0 96.875 2.13333333333333 32 1 18 0 113 144 2317027 2316996 Bdellovibrio bacteriovorus strain MHI39 chromosome blastn 384 54.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
6949656 6949656 PRJNA599026_S_NODE_15446_length_257_cov_1.557692_g14990_i0 PRJNA599026 15446 257 1.557692 4.00326844 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 226 1.3e-54   NTclustered gi|2258818259|gb|CP060220.1| 2026715 g14990 i0 82.869 1.10505836575875 251 43 98 0 1 251 2479487 2479237 MAG: Pseudobdellovibrionaceae bacterium isolate HK-STAS-BDEL-7 chromosome blastn 284 226 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
9500248 9500248 PRJNA599026_S_NODE_48948_length_169_cov_1.108333_g48492_i0 PRJNA599026 48948 169 1.108333 1.87308277 Bdellovibrio sp. HCB209 3394354 Bacteria Bacteria 52.8 0.014   NTclustered gi|2895998570|gb|CP178618.1| 3394354 g48492 i0 96.875 0.189349112426035 32 0 18 1 46 76 2434040 2434071 Bdellovibrio sp. HCB209 chromosome, complete genome blastn 32 52.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB209
19698577 19698577 PRJNA599026_S_NODE_68316_length_162_cov_0.902655_g67860_i0 PRJNA599026 68316 162 0.902655 1.4623011 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 261 2.06e-65   NTclustered gi|1950812799|gb|CP066681.1| 349221 g67860 i0 95.679 1 162 7 100 0 1 162 683651 683490 Micavibrio aeruginosavorus isolate NC_groundwater_70_Ag_B-0.1um_54_66 chromosome blastn 162 261 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
20974237 20974237 PRJNA599026_S_NODE_59757_length_164_cov_1.008696_g59301_i0 PRJNA599026 59757 164 1.008696 1.65426144 Peredibacter starrii 28202 Bacteria Bacteria 272 9.65e-69   NTclustered gi|2631252187|gb|CP139487.1| 28202 g59301 i0 96.386 16.8353658536585 166 4 100 1 1 164 511842 512007 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 2761 272 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
24093279 24093279 PRJNA599026_S_NODE_59299_length_164_cov_1.704348_g58843_i0 PRJNA599026 59299 164 1.704348 2.79513072 Bdellovibrio 958 Bacteria Bacteria 82.4 1.75e-11   NTclustered gi|2800917394|gb|CP168972.1| 959 g58843 i0 89.231 0.810975609756098 65 7 40 0 76 140 2990669 2990605 Bdellovibrio bacteriovorus strain Bd19 chromosome, complete genome blastn 133 82.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;