RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA599026" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA599026 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8224628 8224628 PRJNA599026_S_NODE_18987_length_237_cov_2.760638_g18531_i0 PRJNA599026 18987 237 2.760638 6.54271206 Phycisphaera mikurensis 547188 Bacteria Bacteria 54.7 0.006   NTclustered gi|381385343|dbj|AP012338.1| 1142394 g18531 i0 96.875 0.253164556962025 32 1 14 0 125 156 3275443 3275412 Phycisphaera mikurensis NBRC 102666 DNA, complete genome blastn 60 54.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae Phycisphaera Phycisphaera mikurensis
15169325 15169325 PRJNA599026_S_NODE_16072_length_253_cov_1.730392_g15616_i0 PRJNA599026 16072 253 1.730392 4.37789176 Pseudomonadati 3379134 Bacteria Bacteria 62.1 3.81e-5   NTclustered gi|2874254020|emb|OY970345.1| 412056 g15616 i0 97.222 1.12252964426877 36 1 14 0 3 38 1738871 1738906 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04212.bin.2.122 genome assembly, chromosome: 1 blastn 284 62.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;