RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA599026" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA599026 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6949729 6949729 PRJNA599026_S_NODE_20726_length_230_cov_1.127072_g20270_i0 PRJNA599026 20726 230 1.127072 2.5922656 Entamoeba dispar 46681 Evosea other_Eukaryota 178 3.25e-40   NTclustered gi|167388768|ref|XM_001738637.1| 370354 g20270 i0 86.503 37.3826086956522 163 20 70 2 2 163 941 780 Entamoeba dispar SAW760 26S protease regulatory subunit 6A, putative (EDI_316920), partial mRNA blastn 8598 178 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba dispar
6950026 6950026 PRJNA599026_S_NODE_4806_length_435_cov_2.199482_g4351_i0 PRJNA599026 4806 435 2.199482 9.5677467 Acytostelium subglobosum 361139 Evosea other_Eukaryota 56.5 0.003   NTclustered gi|831758430|ref|XM_012893886.1| 1410327 g4351 i0 92.308 0.0896551724137931 39 3 9 0 25 63 1110 1148 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 39 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
6950379 6950379 PRJNA599026_S_NODE_75346_length_151_cov_2.088235_g74890_i0 PRJNA599026 75346 151 2.088235 3.15323485 Thecamoeba quadrilineata 343530 Discosea other_Eukaryota 73.1 9.46e-9   NTclustered gi|2386968834|ref|NC_068853.1| 343530 g74890 i0 82.927 0.927152317880795 82 12 54 2 58 138 48650 48730 Thecamoeba quadrilineata mitochondrion, complete genome blastn 140 73.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba quadrilineata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;