RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA597223" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA597223 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3120038 3120038 PRJNA597223_P_NODE_34963_length_247_cov_2.580189_g33117_i0 PRJNA597223 34963 247 2.580189 6.37306683 Lecane bulla 96446 Rotifera other_Eukaryota 455 1.4600000000000002e-123   NTclustered gi|83285086|gb|DQ297698.1| 96446 g33117 i0 100 99.5991902834008 246 0 99 0 2 247 866 621 Lecane bulla 18S ribosomal RNA gene, partial sequence blastn 24601 455 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lecanidae Lecane Lecane bulla
5672823 5672823 PRJNA597223_P_NODE_36105_length_242_cov_1.898551_g34259_i0 PRJNA597223 36105 242 1.898551 4.59449342 Adineta vaga 104782 Rotifera other_Eukaryota 228 3.3699999999999986e-55   NTclustered gi|187233665|gb|EU643499.1| 104782 g34259 i0 90.395 0.731404958677686 177 11 73 1 66 242 443 273 Adineta vaga ribosomal protein L26 mRNA, partial cds blastn 177 228 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
20267078 20267078 PRJNA597223_P_NODE_10296_length_539_cov_4.636905_g8632_i0 PRJNA597223 10296 539 4.636905 24.99291795 Eurotatoria 2816136 Rotifera other_Eukaryota 924 0   NTclustered gi|37785582|gb|AY210469.1| 96448 g8632 i0 97.765 45.0760667903525 537 10 99 1 1 535 1847 2383 Philodina roseola 28S ribosomal RNA gene, partial sequence blastn 24296 924 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;