RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA597223" and tax_phylum = "Cnidaria"

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tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA597223 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8222309 8222309 PRJNA597223_P_NODE_38927_length_230_cov_2.343590_g37081_i0 PRJNA597223 38927 230 2.34359 5.390257 Hydra vulgaris 6087 Cnidaria other_Eukaryota 62.1 3.41e-5   NTclustered gi|2744866757|ref|XM_065800145.1| 6087 g37081 i0 94.872 0.304347826086957 39 2 17 0 94 132 539 577 PREDICTED: Hydra vulgaris procathepsin L (LOC100197138), transcript variant X2, mRNA blastn 70 62.1 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Anthoathecata Hydridae Hydra Hydra vulgaris
12048170 12048170 PRJNA597223_P_NODE_35110_length_246_cov_4.417062_g33264_i0 PRJNA597223 35110 246 4.417062 10.86597252 Clytia hemisphaerica 252671 Cnidaria other_Eukaryota 52.8 0.022   NTclustered gi|2782839894|ref|XM_067055043.1| 252671 g33264 i0 100 0.227642276422764 28 0 11 0 83 110 7961 7988 PREDICTED: Clytia hemisphaerica uncharacterized protein (LOC136798434), transcript variant X2, mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Leptothecata Clytiidae Clytia Clytia hemisphaerica
17147268 17147268 PRJNA597223_P_NODE_85954_length_152_cov_1.025641_g84108_i0 PRJNA597223 85954 152 1.025641 1.55897432 Acropora millepora 45264 Cnidaria other_Eukaryota 152 1.19e-32   NTclustered gi|2113819773|ref|XM_029331768.2| 45264 g84108 i0 84.768 55.1644736842105 151 23 99 0 2 152 769 619 PREDICTED: Acropora millepora endoplasmic reticulum chaperone BiP-like (LOC114955027), mRNA blastn 8385 152 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Scleractinia Acroporidae Acropora Acropora millepora
20971367 20971367 PRJNA597223_P_NODE_42617_length_217_cov_2.587912_g40771_i0 PRJNA597223 42617 217 2.587912 5.61576904 Plumarella sp. 3126602 Cnidaria other_Eukaryota 130 8.610000000000001e-26   NTclustered gi|2689317335|gb|PP410763.1| 3126602 g40771 i0 85.484 34.3870967741936 124 18 57 0 85 208 1991 2114 Plumarella sp. voucher USNM:1606536 large subunit ribosomal RNA gene, partial sequence blastn 7462 130 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Scleralcyonacea Primnoidae Plumarella Plumarella sp.
22246356 22246356 PRJNA597223_P_NODE_52218_length_193_cov_1.101266_g50372_i0 PRJNA597223 52218 193 1.101266 2.12544338 Hydra vulgaris 6087 Cnidaria other_Eukaryota 89.8 1.27e-13   NTclustered gi|2744833237|ref|XM_047269120.2| 6087 g50372 i0 83 1.98445595854922 100 15 51 2 20 118 1133 1035 PREDICTED: Hydra vulgaris heat shock protein HSP 90-alpha (LOC101235897), mRNA blastn 383 89.8 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Anthoathecata Hydridae Hydra Hydra vulgaris
23521299 23521299 PRJNA597223_P_NODE_27359_length_293_cov_6.170543_g25513_i0 PRJNA597223 27359 293 6.170543 18.07969099 Acropora formosa 126732 Cnidaria other_Eukaryota 82.4 3.47e-11   NTclustered gi|692518457|gb|KJ648506.1| 126732 g25513 i0 85.185 30.7645051194539 81 10 27 2 188 267 466 387 Acropora formosa isolate HN14 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9014 82.4 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Scleractinia Acroporidae Acropora Acropora formosa
24795668 24795668 PRJNA597223_P_NODE_82840_length_155_cov_0.925000_g80994_i0 PRJNA597223 82840 155 0.925 1.43375 Myxidium streisingeri 1542451 Cnidaria other_Eukaryota 270 3.23e-68   NTclustered gi|681870005|gb|KM001688.1| 1542451 g80994 i0 98.065 23.2451612903226 155 3 100 0 1 155 1949 2103 Myxidium streisingeri clone ZF10 18S small subunit ribosomal RNA gene, partial sequence blastn 3603 270 1 Eukaryota Opisthokonta Metazoa Cnidaria Myxozoa Bivalvulida Myxidiidae Myxidium Myxidium streisingeri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;