RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA597223" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA597223 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16443360 16443360 PRJNA597223_P_NODE_16993_length_401_cov_2.983607_g15181_i0 PRJNA597223 16993 401 2.983607 11.96426407 root 1 Root_unresolved Root_unresolved 440 7.019999999999997e-119   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g15181 i0 96.283 65.6359102244389 269 9 67 1 20 287 3123927 3124195 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 26320 440 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
17718716 17718716 PRJNA597223_P_NODE_87434_length_151_cov_1.275862_g85588_i0 PRJNA597223 87434 151 1.275862 1.92655162 Methanothrix 2222 Archaea Archaea 276 6.72e-70   NTclustered gi|507148322|ref|NR_103125.1| 2223 g85588 i0 100 49.7814569536424 149 0 99 0 2 150 2852 2704 Methanosaeta concilii strain GP6 23S ribosomal RNA gene, complete sequence blastn 7517 276 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix soehngenii
18420766 18420766 PRJNA597223_P_NODE_17095_length_399_cov_7279.043956_g15283_i0 PRJNA597223 17095 399 7279.043956 29043.38538444 uncultured Methanoregula sp. 1005933 Archaea Archaea 693 0   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g15283 i0 97.995 287.749373433584 399 8 100 0 1 399 3117499 3117101 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 114812 693 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;