RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA596870" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA596870 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4968701 4968701 PRJNA596870_P_NODE_38884_length_242_cov_0.911243_g38751_i0 PRJNA596870 38884 242 0.911243 2.20520806 Desulfosudis 2904716 Bacteria Bacteria 252 2e-62   NTclustered gi|158508843|gb|CP000859.1| 96561 g38751 i0 85.714 201.285123966942 245 28 100 6 1 242 684011 683771 Desulfococcus oleovorans Hxd3, complete genome blastn 48711 252 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfosudaceae Desulfosudis Desulfosudis oleivorans
6946676 6946676 PRJNA596870_P_NODE_28666_length_252_cov_2.022346_g28533_i0 PRJNA596870 28666 252 2.022346 5.09631192 Desulfovibrio sp. 86 2666132 Bacteria Bacteria 466 6.89e-127   NTclustered gi|1862956133|emb|LR738849.1| 2666132 g28533 i0 100 103 252 0 100 0 1 252 3245259 3245510 Desulfovibrio sp. 86 genome assembly, chromosome: DESU86 blastn 25956 466 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp. 86

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;