RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA596870" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA596870 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8793289 8793289 PRJNA596870_P_NODE_22727_length_283_cov_1.247619_g22594_i0 PRJNA596870 22727 283 1.247619 3.53076177 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 381 2.929999999999999e-101   NTclustered gi|698822380|ref|XM_009845917.1| 112090 g22594 i0 91.103 60.3533568904594 281 25 99 0 1 281 160 440 Aphanomyces astaci hypothetical protein mRNA blastn 17080 381 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
18991991 18991991 PRJNA596870_P_NODE_6815_length_471_cov_0.967337_g6682_i0 PRJNA596870 6815 471 0.967337 4.55615727 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 296 1.92e-75   NTclustered gi|2795032738|ref|XM_067933181.1| 4785 g6682 i0 82.456 78.791932059448 342 57 73 2 24 365 991 653 Phytophthora cinnamomi Electron transfer flavoprotein subunit alpha, mitochondrial precursor (IUM83_08787), partial mRNA blastn 37111 296 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;