RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA596870" and tax_phylum = "Hemichordata"

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tax_superkingdom 1

tax_phylum 1

  • Hemichordata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA596870 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12047215 12047215 PRJNA596870_P_NODE_10270_length_394_cov_4.299065_g10137_i0 PRJNA596870 10270 394 4.299065 16.9383161 Ptychodera flava 63121 Hemichordata other_Eukaryota 346 1.54e-90   NTclustered gi|2875735008|ref|XM_070698332.1| 63121 g10137 i0 85.586 76.0482233502538 333 44 84 4 1 329 686 354 PREDICTED: Ptychodera flava tubulin beta-4 chain-like (LOC139131983), mRNA blastn 29963 346 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava
14597653 14597653 PRJNA596870_P_NODE_9992_length_400_cov_1.308869_g9859_i0 PRJNA596870 9992 400 1.308869 5.235476 Ptychodera flava 63121 Hemichordata other_Eukaryota 169 3.65e-37   NTclustered gi|2875658907|ref|XM_070714316.1| 63121 g9859 i0 80.734 2.265 218 40 54 2 178 394 140 356 PREDICTED: Ptychodera flava histone H2B, gonadal-like (LOC139143767), mRNA blastn 906 169 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;