RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA596870" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA596870 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12047477 12047477 PRJNA596870_P_NODE_24310_length_275_cov_1.143564_g24177_i0 PRJNA596870 24310 275 1.143564 3.144801 Dictyostelium discoideum 44689 Evosea other_Eukaryota 54.7 0.007   NTclustered gi|66823272|ref|XM_639899.1| 352472 g24177 i0 100 0.105454545454545 29 0 11 0 225 253 788 816 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0272746) mRNA, complete cds blastn 29 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
13322545 13322545 PRJNA596870_P_NODE_37991_length_243_cov_0.905882_g37858_i0 PRJNA596870 37991 243 0.905882 2.20129326 Heterostelium album 2086695 Evosea other_Eukaryota 58.4 4.71e-4   NTclustered gi|1160562778|ref|XM_020579604.1| 670386 g37858 i0 94.595 0.296296296296296 37 2 15 0 44 80 1461 1497 Polysphondylium pallidum PN500 aldehyde dehydrogenase partial mRNA blastn 72 58.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
18420370 18420370 PRJNA596870_P_NODE_29295_length_251_cov_0.865169_g29162_i0 PRJNA596870 29295 251 0.865169 2.17157419 Heterostelium album 2086695 Evosea other_Eukaryota 52.8 0.023   NTclustered gi|1160566216|ref|XM_020580730.1| 670386 g29162 i0 100 0.111553784860558 28 0 11 0 55 82 2180 2207 Polysphondylium pallidum PN500 RabGAP/TBC domain-containing protein partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;