RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA596870" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA596870 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14597472 14597472 PRJNA596870_P_NODE_36912_length_244_cov_0.900585_g36779_i0 PRJNA596870 36912 244 0.900585 2.1974274 Vexillifera fluvialis 1105343 Discosea other_Eukaryota 409 1.1299999999999998e-109   NTclustered gi|354720323|gb|HQ687482.1| 1105343 g36779 i0 96.774 58.3032786885246 248 3 100 4 1 244 1491 1245 Vexillifera fluvialis strain RR1 small subunit ribosomal RNA gene, partial sequence blastn 14226 409 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera fluvialis
15871224 15871224 PRJNA596870_P_NODE_33213_length_247_cov_5.925287_g33080_i0 PRJNA596870 33213 247 5.925287 14.63545889 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 281 2.62e-71   NTclustered gi|470421212|ref|XM_004337322.1| 1257118 g33080 i0 89.593 82.2672064777328 221 23 89 0 27 247 1 221 Acanthamoeba castellanii str. Neff actin, putative (ACA1_328920), partial mRNA blastn 20320 281 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24794521 24794521 PRJNA596870_P_NODE_27580_length_258_cov_1.248649_g27447_i0 PRJNA596870 27580 258 1.248649 3.22151442 Vexillifera fluvialis 1105343 Discosea other_Eukaryota 477 3.2699999999999985e-130   NTclustered gi|354720323|gb|HQ687482.1| 1105343 g27447 i0 100 78.6124031007752 258 0 100 0 1 258 823 1080 Vexillifera fluvialis strain RR1 small subunit ribosomal RNA gene, partial sequence blastn 20282 477 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera fluvialis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;