RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA596870" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA596870 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5672355 5672355 PRJNA596870_P_NODE_35945_length_245_cov_0.895349_g35812_i0 PRJNA596870 35945 245 0.895349 2.19360505 Spizellomyces punctatus 109760 Fungi Fungi 267 7.249999999999999e-67   NTclustered gi|1027002790|ref|XM_016754434.1| 645134 g35812 i0 86.42 218.657142857143 243 33 99 0 1 243 636 394 Spizellomyces punctatus DAOM BR117 polyubiquitin (SPPG_06227), mRNA blastn 53571 267 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
8221421 8221421 PRJNA596870_P_NODE_18267_length_311_cov_0.970588_g18134_i0 PRJNA596870 18267 311 0.970588 3.01852868 Polychytrium aggregatum 110093 Fungi Fungi 265 3.4299999999999996e-66   NTclustered gi|2432131643|ref|XM_053113105.1| 110093 g18134 i0 82.566 95.6784565916399 304 49 97 4 4 305 262 563 Polychytrium aggregatum 40S ribosomal protein S2 (BJ171DRAFT_557656), partial mRNA blastn 29756 265 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;