RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA596870" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA596870 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8221772 8221772 PRJNA596870_P_NODE_36087_length_245_cov_0.895349_g35954_i0 PRJNA596870 36087 245 0.895349 2.19360505 Deinococcus sp. QL22 2939437 Bacteria Bacteria 193 1.25e-44   NTclustered gi|2238957582|gb|CP097149.1| 2939437 g35954 i0 80.816 27.9510204081633 245 47 100 0 1 245 1762438 1762194 Deinococcus sp. QL22 chromosome, complete genome blastn 6848 193 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. QL22
8793359 8793359 PRJNA596870_P_NODE_35527_length_245_cov_0.895349_g35394_i0 PRJNA596870 35527 245 0.895349 2.19360505 Deinococcus 1298 Bacteria Bacteria 95.3 3.62e-15   NTclustered gi|2706837832|gb|CP149782.1| 3112952 g35394 i0 78.912 1.18775510204082 147 26 60 4 100 245 2079628 2079486 Deinococcus sp. VB142 chromosome 1, complete sequence blastn 291 95.3 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. VB142

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;