RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA596870" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA596870 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
568364 568364 PRJNA596870_P_NODE_25001_length_271_cov_1.944444_g24868_i0 PRJNA596870 25001 271 1.944444 5.26944324 Seculamonas ecuadoriensis 221724 Root_unresolved Root_unresolved 176 1.41e-39   NTclustered gi|2443276641|gb|OP760405.1| 221724 g24868 i0 78.947 18.2619926199262 266 50 97 6 3 265 401 139 Seculamonas ecuadoriensis 40S ribosomal protein SA mRNA, complete cds blastn 4949 176 1 Eukaryota Discoba       Jakobida   Seculamonas Seculamonas ecuadoriensis
6946841 6946841 PRJNA596870_P_NODE_36806_length_244_cov_0.900585_g36673_i0 PRJNA596870 36806 244 0.900585 2.1974274 Trypanosoma vivax 5699 Euglenozoa other_Eukaryota 52.8 0.022   NTclustered gi|340058162|emb|HE573027.1| 1055687 g36673 i0 100 0.114754098360656 28 0 11 0 212 239 771392 771419 Trypanosoma vivax Y486 annotated genomic contig, chromosome 11 blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma vivax
14597425 14597425 PRJNA596870_P_NODE_34332_length_246_cov_1.335260_g34199_i0 PRJNA596870 34332 246 1.33526 3.2847396 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 444 3.14e-120   NTclustered gi|427188201|dbj|AB757706.1| 56466 g34199 i0 99.187 1 246 2 100 0 1 246 883 638 Peranema trichophorum rpl3 mRNA for 60S ribosomal protein L3, partial cds, strain: K-01 blastn 246 444 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
20970523 20970523 PRJNA596870_P_NODE_21897_length_287_cov_1.411215_g21764_i0 PRJNA596870 21897 287 1.411215 4.05018705 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 324 5.09e-84   NTclustered gi|110589646|gb|DQ683345.1| 56466 g21764 i0 96.891 5.31358885017422 193 6 100 0 1 193 1478 1286 Peranema trichophorum Hsp90 gene, partial cds blastn 1525 324 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;