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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA596870" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA596870 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12047477 12047477 PRJNA596870_P_NODE_24310_length_275_cov_1.143564_g24177_i0 PRJNA596870 24310 275 1.143564 3.144801 Dictyostelium discoideum 44689 Evosea other_Eukaryota 54.7 0.007   NTclustered gi|66823272|ref|XM_639899.1| 352472 g24177 i0 100 0.105454545454545 29 0 11 0 225 253 788 816 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0272746) mRNA, complete cds blastn 29 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
13322545 13322545 PRJNA596870_P_NODE_37991_length_243_cov_0.905882_g37858_i0 PRJNA596870 37991 243 0.905882 2.20129326 Heterostelium album 2086695 Evosea other_Eukaryota 58.4 4.71e-4   NTclustered gi|1160562778|ref|XM_020579604.1| 670386 g37858 i0 94.595 0.296296296296296 37 2 15 0 44 80 1461 1497 Polysphondylium pallidum PN500 aldehyde dehydrogenase partial mRNA blastn 72 58.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
14597472 14597472 PRJNA596870_P_NODE_36912_length_244_cov_0.900585_g36779_i0 PRJNA596870 36912 244 0.900585 2.1974274 Vexillifera fluvialis 1105343 Discosea other_Eukaryota 409 1.1299999999999998e-109   NTclustered gi|354720323|gb|HQ687482.1| 1105343 g36779 i0 96.774 58.3032786885246 248 3 100 4 1 244 1491 1245 Vexillifera fluvialis strain RR1 small subunit ribosomal RNA gene, partial sequence blastn 14226 409 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera fluvialis
15871224 15871224 PRJNA596870_P_NODE_33213_length_247_cov_5.925287_g33080_i0 PRJNA596870 33213 247 5.925287 14.63545889 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 281 2.62e-71   NTclustered gi|470421212|ref|XM_004337322.1| 1257118 g33080 i0 89.593 82.2672064777328 221 23 89 0 27 247 1 221 Acanthamoeba castellanii str. Neff actin, putative (ACA1_328920), partial mRNA blastn 20320 281 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
18420370 18420370 PRJNA596870_P_NODE_29295_length_251_cov_0.865169_g29162_i0 PRJNA596870 29295 251 0.865169 2.17157419 Heterostelium album 2086695 Evosea other_Eukaryota 52.8 0.023   NTclustered gi|1160566216|ref|XM_020580730.1| 670386 g29162 i0 100 0.111553784860558 28 0 11 0 55 82 2180 2207 Polysphondylium pallidum PN500 RabGAP/TBC domain-containing protein partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
24794521 24794521 PRJNA596870_P_NODE_27580_length_258_cov_1.248649_g27447_i0 PRJNA596870 27580 258 1.248649 3.22151442 Vexillifera fluvialis 1105343 Discosea other_Eukaryota 477 3.2699999999999985e-130   NTclustered gi|354720323|gb|HQ687482.1| 1105343 g27447 i0 100 78.6124031007752 258 0 100 0 1 258 823 1080 Vexillifera fluvialis strain RR1 small subunit ribosomal RNA gene, partial sequence blastn 20282 477 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera fluvialis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;