RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA596867" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA596867 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6244028 6244028 PRJNA596867_P_NODE_8805_length_281_cov_1.370192_g8730_i0 PRJNA596867 8805 281 1.370192 3.85023952 Gemmata 113 Bacteria Bacteria 453 6.08e-123   NTclustered gi|1727537522|gb|CP042911.1| 114 g8730 i0 95.73 79.1886120996441 281 12 100 0 1 281 1036284 1036004 Gemmata obscuriglobus strain DSM 5831 chromosome, complete genome blastn 22252 453 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Gemmata Gemmata obscuriglobus
17145631 17145631 PRJNA596867_P_NODE_10254_length_263_cov_2.436842_g10179_i0 PRJNA596867 10254 263 2.436842 6.40889446 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 470 5.59e-128   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g10179 i0 98.859 52.745247148289 263 3 100 0 1 263 3556569 3556831 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 13872 470 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;