RNAquarium Metadata Server
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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA594101" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 10 ✖

tax_clade 1

bioproject 1

  • PRJNA594101 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1842702 1842702 PRJNA594101_S_NODE_44242_length_262_cov_2.661376_g43940_i0 PRJNA594101 44242 262 2.661376 6.97280512 Lentivirus humimdef1 3418650 Viruses Viruses 62.1 3.97e-5   NTclustered gi|407734945|gb|JX447155.1| 11676 g43940 i0 95 0.305343511450382 40 0 15 2 129 168 4394 4357 HIV-1 isolate AA039a03R from Thailand pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds blastn 80 62.1 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
3117959 3117959 PRJNA594101_S_NODE_22483_length_355_cov_1.705674_g22181_i0 PRJNA594101 22483 355 1.705674 6.0551427 Orthopoxvirus monkeypox 3431483 Viruses Viruses 54.7 0.009   NTclustered gi|2309594316|gb|OP536747.1| 10244 g22181 i0 100 8.16901408450704 29 0 8 0 51 79 119302 119274 Monkeypox virus isolate 9000365, partial genome blastn 2900 54.7 1 Viruses   Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae Orthopoxvirus Orthopoxvirus monkeypox
4394636 4394636 PRJNA594101_S_NODE_32904_length_300_cov_1.726872_g32602_i0 PRJNA594101 32904 300 1.726872 5.180616 Pithovirus LCDPAC01 2506600 Viruses Viruses 52.8 0.028   NTclustered gi|1588058088|gb|MK500295.1| 2506600 g32602 i0 100 0.186666666666667 28 0 9 0 148 175 1296 1269 MAG: Pithovirus LCDPAC01 genomic sequence blastn 56 52.8 1 Viruses Pithoviruses             Pithovirus LCDPAC01
10771429 10771429 PRJNA594101_S_NODE_43909_length_263_cov_2.178947_g43607_i0 PRJNA594101 43909 263 2.178947 5.73063061 Mitovirus sp. 2587224 Viruses Viruses 148 2.9799999999999997e-31   NTclustered gi|1698234317|gb|MN033515.1| 2587224 g43607 i0 93.878 3.5171102661597 98 6 37 0 1 98 15 112 MAG: Mitovirus sp. isolate H1_Rhizo_26_FD_scaffold_6751 sequence blastn 925 148 1 Viruses   Orthornavirae Lenarviricota Howeltoviricetes Cryppavirales Mitoviridae Mitovirus Mitovirus sp.
17144676 17144676 PRJNA594101_S_NODE_25974_length_332_cov_13.498069_g25672_i0 PRJNA594101 25974 332 13.498069 44.81358908 Escherichia phage A4 2950725 Viruses Viruses 58.4 6.72e-4   NTclustered gi|2258073376|gb|ON286972.1| 2950725 g25672 i0 100 0.635542168674699 31 0 9 0 4 34 69167 69197 Escherichia phage A4, complete genome blastn 211 58.4 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes     Asteriusvirus Escherichia phage A4
17144770 17144770 PRJNA594101_S_NODE_38254_length_281_cov_1.105769_g37952_i0 PRJNA594101 38254 281 1.105769 3.10721089 Hubei orthoptera virus 4 1923012 Viruses Viruses 58.4 5.57e-4   NTclustered gi|2717470121|gb|PP272689.1| 1923012 g37952 i0 100 0.110320284697509 31 0 11 0 250 280 2700 2730 MAG: Hubei orthoptera virus 4 isolate ribo_32 RNA-dependent RNA polymerase gene, partial cds blastn 31 58.4 1 Viruses               Hubei orthoptera virus 4
18419050 18419050 PRJNA594101_S_NODE_47495_length_254_cov_1.254144_g47193_i0 PRJNA594101 47495 254 1.254144 3.18552576 Hokovirus HKV1 1977638 Viruses Viruses 265 2.7199999999999996e-66   NTclustered gi|1174571674|gb|KY684104.1| 1977638 g47193 i0 85.887 176.05905511811 248 35 98 0 5 252 162555 162802 Hokovirus HKV1 isolate HKV1 clone Hokovirus_2, sequence blastn 44719 265 1 Viruses   Bamfordvirae Nucleocytoviricota Megaviricetes Imitervirales Mimiviridae Hokovirus Hokovirus HKV1
22244084 22244084 PRJNA594101_S_NODE_10098_length_516_cov_1.790068_g9798_i0 PRJNA594101 10098 516 1.790068 9.23675088 Pandoravirus quercus 2107709 Viruses Viruses 69.4 5.02e-7   NTclustered gi|1408259612|ref|NC_037667.1| 2107709 g9798 i0 84.286 0.631782945736434 70 11 14 0 82 151 1563577 1563508 Pandoravirus quercus, complete genome blastn 326 69.4 1 Viruses             Pandoravirus Pandoravirus quercus
24091389 24091389 PRJNA594101_S_NODE_8819_length_551_cov_2.594142_g8519_i0 PRJNA594101 8819 551 2.594142 14.29372242 Lambdapapillomavirus 325462 Viruses Viruses 56.5 0.004   NTclustered gi|21039033|gb|AF377865.1| 181667 g8519 i0 96.97 0.17967332123412 33 1 6 0 516 548 3175 3207 Feline papillomavirus putative transforming protein E6 (E6), putative transforming protein E7 (E7), putative replication protein E1 (E1), and putative regulatory protein E2 (E2) genes, complete cds; putative protein E4 (E4) gene, partial cds; and putative minor capsid protein L2 (L2) and putative major capsid protein L1 (L1) genes, complete cds blastn 99 56.5 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Lambdapapillomavirus Lambdapapillomavirus 1
24793409 24793409 PRJNA594101_S_NODE_6760_length_627_cov_10.691336_g6464_i0 PRJNA594101 6760 627 10.691336 67.03467672 Maltschvirus maltsch 2956182 Viruses Viruses 56.5 0.005   NTclustered gi|1839202119|emb|LR797277.1| 2100421 g6464 i0 94.444 0.114832535885167 36 2 6 0 201 236 12643 12608 uncultured Caudovirales phage genome assembly blastn 72 56.5 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes   Peduoviridae Maltschvirus Maltschvirus maltsch

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;