RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA594101" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA594101 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
567076 567076 PRJNA594101_S_NODE_33721_length_297_cov_1.361607_g33419_i0 PRJNA594101 33721 297 1.361607 4.04397279 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.028   NTclustered gi|17508940|ref|NM_059399.1| 6239 g33419 i0 100 0.282828282828283 28 0 9 0 61 88 37 64 Caenorhabditis elegans Col_cuticle_N domain-containing protein (col-56), partial mRNA blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
17144668 17144668 PRJNA594101_S_NODE_24854_length_339_cov_1.864662_g24552_i0 PRJNA594101 24854 339 1.864662 6.32120418 Caenorhabditis briggsae 6238 Nematoda Nematoda 176 1.82e-39   NTclustered gi|268579656|ref|XM_002644765.1| 6238 g24552 i0 77.381 24.3598820058997 336 51 97 15 10 337 1085 1403 Caenorhabditis briggsae Protein CBR-HSP-3 (Cbr-hsp-3), partial mRNA blastn 8258 176 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
20969135 20969135 PRJNA594101_S_NODE_14197_length_439_cov_1.792350_g13895_i0 PRJNA594101 14197 439 1.79235 7.8684165 Trichinella spiralis 6334 Nematoda Nematoda 82.4 5.41e-11   NTclustered gi|339259989|ref|XM_003368581.1| 6334 g13895 i0 97.872 0.651480637813212 47 1 11 0 5 51 281 327 Trichinella spiralis spliceosome RNA helicase BAT1 (Tsp_12657) mRNA, complete cds blastn 286 82.4 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;