RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA594101" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA594101 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5670889 5670889 PRJNA594101_S_NODE_41685_length_270_cov_1.147208_g41383_i0 PRJNA594101 41685 270 1.147208 3.0974616 Archangium gephyra 48 Bacteria Bacteria 52.8 0.025   NTclustered gi|827418478|gb|CP011509.1| 48 g41383 i0 100 0.103703703703704 28 0 10 0 97 124 1219861 1219888 Archangium gephyra strain DSM 2261, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium gephyra
9495400 9495400 PRJNA594101_S_NODE_22928_length_352_cov_1.344086_g22626_i0 PRJNA594101 22928 352 1.344086 4.73118272 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 52.8 0.033   NTclustered gi|2108117163|gb|CP070734.1| 2026735 g22626 i0 100 0.0795454545454545 28 0 8 0 132 159 2160336 2160309 MAG: Deltaproteobacteria bacterium isolate bin407 chromosome blastn 28 52.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
13320924 13320924 PRJNA594101_S_NODE_16751_length_406_cov_2.150150_g16449_i0 PRJNA594101 16751 406 2.15015 8.729609 Myxococcus sp. SDU36 2831967 Bacteria Bacteria 60.2 2.33e-4   NTclustered gi|2513984958|gb|CP077414.1| 2831967 g16449 i0 100 0.251231527093596 32 0 8 0 115 146 3852001 3852032 Myxococcus sp. SDU36 chromosome, complete genome blastn 102 60.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus sp. SDU36

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;