RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA594101" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA594101 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6243040 6243040 PRJNA594101_S_NODE_26925_length_327_cov_2.401575_g26623_i0 PRJNA594101 26925 327 2.401575 7.85315025 Bacteria 2 Bacteria Bacteria 52.8 0.031   NTclustered gi|2893358444|emb|OZ220736.1| 2910147 g26623 i0 100 0.171253822629969 28 0 9 0 155 182 1317127 1317100 MAG: Vicinamibacterales bacterium isolate e96e4bd8-36b5-4932-a7c8-d2011ef2eb69 genome assembly, chromosome: 1 blastn 56 52.8 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
14595766 14595766 PRJNA594101_S_NODE_10232_length_513_cov_1.443182_g9932_i0 PRJNA594101 10232 513 1.443182 7.40352366 Luteitalea pratensis 1855912 Bacteria Bacteria 56.5 0.004   NTclustered gi|1016914409|gb|CP015136.1| 1855912 g9932 i0 97.059 0.0662768031189084 34 0 7 1 329 362 5559302 5559334 Luteitalea pratensis strain DSM 100886 chromosome, complete genome blastn 34 56.5 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales Vicinamibacteraceae Luteitalea Luteitalea pratensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;