RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA594101" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 1 ✖

bioproject 1

  • PRJNA594101 · 1 ✖

analysis 1

  • blastn · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12046006 12046006 PRJNA594101_S_NODE_10730_length_501_cov_2.605140_g10429_i0 PRJNA594101 10730 501 2.60514 13.0517514 Symmachiella dynata 2527995 Bacteria Bacteria 56.5 0.004   NTclustered gi|1712609668|gb|CP036276.1| 2527995 g10429 i0 96.97 0.720558882235529 33 1 7 0 117 149 6130014 6130046 Symmachiella dynata strain Mal52 chromosome, complete genome blastn 361 56.5 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Symmachiella Symmachiella dynata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;