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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA594101" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 11 ✖

bioproject 1

  • PRJNA594101 · 11 ✖

analysis 1

  • blastn · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3690890 3690890 PRJNA594101_S_NODE_45003_length_260_cov_2.074866_g44701_i0 PRJNA594101 45003 260 2.074866 5.3946516 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 54.7 0.007   NTclustered gi|330806422|ref|XM_003291121.1| 5786 g44701 i0 100 1.61153846153846 29 0 11 0 84 112 885 857 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_38600), partial mRNA blastn 419 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
5670927 5670927 PRJNA594101_S_NODE_46805_length_255_cov_3.335165_g46503_i0 PRJNA594101 46805 255 3.335165 8.50467075 Dictyostelium discoideum 44689 Evosea other_Eukaryota 176 1.32e-39   NTclustered gi|66826022|ref|XM_641274.1| 352472 g46503 i0 86.709 2.15294117647059 158 21 62 0 83 240 200 43 Dictyostelium discoideum AX4 S60 ribosomal protein L36a (rpl36a) mRNA, complete cds blastn 549 176 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
14595987 14595987 PRJNA594101_S_NODE_34832_length_293_cov_1.209091_g34530_i0 PRJNA594101 34832 293 1.209091 3.54263663 Amoeba proteus 5775 Tubulinea other_Eukaryota 438 1.7799999999999999e-118   NTclustered gi|844573744|gb|KP411223.1| 5775 g34530 i0 93.603 1.01365187713311 297 14 100 3 1 293 317 22 Amoeba proteus Tom40 mRNA, complete cds blastn 297 438 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
15167543 15167543 PRJNA594101_S_NODE_58432_length_233_cov_2.743750_g58130_i0 PRJNA594101 58432 233 2.74375 6.3929375 Dictyostelium 5782 Evosea other_Eukaryota 191 4.23e-44   NTclustered gi|790953|dbj|D50338.1| 44689 g58130 i0 86.364 61.175965665236 176 22 75 2 54 228 2872 2698 Dictyostelium discoideum DNA for ribosomal protein, complete cds blastn 14254 191 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
17144673 17144673 PRJNA594101_S_NODE_25434_length_336_cov_0.901141_g25132_i0 PRJNA594101 25434 336 0.901141 3.02783376 Dictyostelium purpureum 5786 Evosea other_Eukaryota 63.9 1.46e-5   NTclustered gi|330797548|ref|XM_003286774.1| 5786 g25132 i0 90 30.9285714285714 50 3 15 2 208 256 564 612 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_97523), partial mRNA blastn 10392 63.9 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
18418982 18418982 PRJNA594101_S_NODE_40375_length_274_cov_1.149254_g40073_i0 PRJNA594101 40375 274 1.149254 3.14895596 Entamoeba histolytica 5759 Evosea other_Eukaryota 52.8 0.025   NTclustered gi|150979571|gb|EF421400.1| 5759 g40073 i0 100 0.102189781021898 28 0 10 0 5 32 75 102 Entamoeba histolytica strain 1309-DS6 tRNA array unit STR S(TGA)-D type 14SD genomic sequence blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
19693380 19693380 PRJNA594101_S_NODE_1976_length_1090_cov_3.731563_g1797_i0 PRJNA594101 1976 1090 3.731563 40.6740367 Physarum polycephalum 5791 Evosea other_Eukaryota 58.4 0.002   NTclustered gi|4249354|gb|M38038.1|SLMPROP1 5791 g1797 i0 100 0.055045871559633 31 0 3 0 163 193 740 710 Physarum polycephalum profilin P (proP) gene, complete cds blastn 60 58.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
19693480 19693480 PRJNA594101_S_NODE_3336_length_869_cov_1.856784_g3094_i0 PRJNA594101 3336 869 1.856784 16.13545296 Dictyostelium purpureum 5786 Evosea other_Eukaryota 503 2.01e-137   NTclustered gi|330842692|ref|XM_003293259.1| 5786 g3094 i0 77.376 13.662830840046 884 176 100 22 1 869 2298 1424 Dictyostelium purpureum elongation factor 2 (DICPUDRAFT_58424), mRNA blastn 11873 503 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
22244169 22244169 PRJNA594101_S_NODE_22898_length_352_cov_1.655914_g22596_i0 PRJNA594101 22898 352 1.655914 5.82881728 Dictyostelium purpureum 5786 Evosea other_Eukaryota 52.8 0.033   NTclustered gi|330845914|ref|XM_003294761.1| 5786 g22596 i0 100 0.0795454545454545 28 0 8 0 227 254 3290 3263 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_159873), partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
23519475 23519475 PRJNA594101_S_NODE_36319_length_287_cov_2.443925_g36017_i0 PRJNA594101 36319 287 2.443925 7.01406475 Pellita digitata 1485084 Discosea other_Eukaryota 274 5.199999999999998e-69   NTclustered gi|608606230|gb|KF705037.1| 1485084 g36017 i0 88.646 60.9442508710801 229 21 79 4 60 287 1295 1071 Pellita digitata clone 2 18S ribosomal RNA gene, partial sequence blastn 17491 274 1 Eukaryota Amoebozoa   Discosea Flabellinia   Pellitidae Pellita Pellita digitata
24793136 24793136 PRJNA594101_S_NODE_20420_length_371_cov_1.788591_g20118_i0 PRJNA594101 20420 371 1.788591 6.63567261 Dictyostelium purpureum 5786 Evosea other_Eukaryota 287 8.88e-73   NTclustered gi|330818907|ref|XM_003291484.1| 5786 g20118 i0 80.978 13.5660377358491 368 64 98 5 3 367 51 415 Dictyostelium purpureum ribosomal protein L10E (DICPUDRAFT_92700), mRNA blastn 5033 287 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;