RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA591127" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA591127 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1840525 1840525 PRJNA591127_P_NODE_13082_length_203_cov_3.042169_g12913_i0 PRJNA591127 13082 203 3.042169 6.17560307 Pelodera teres 96650 Nematoda Nematoda 375 9.24e-100   NTclustered gi|158821915|gb|EU195979.1| 96650 g12913 i0 100 43.384236453202 203 0 100 0 1 203 3132 3334 Pelodera teres strain EM437 28S ribosomal RNA gene, partial sequence blastn 8807 375 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Pelodera Pelodera teres
8218344 8218344 PRJNA591127_P_NODE_3647_length_377_cov_4.867647_g3479_i0 PRJNA591127 3647 377 4.867647 18.35102919 Pelodera teres 96650 Nematoda Nematoda 673 0   NTclustered gi|8515041|gb|AF083002.1| 96650 g3479 i0 99.728 21.3236074270557 368 0 98 1 1 368 367 1 Pelodera teres strain EM437 18S ribosomal RNA gene, partial sequence blastn 8039 673 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Pelodera Pelodera teres
9493573 9493573 PRJNA591127_P_NODE_6208_length_295_cov_3.461240_g6040_i0 PRJNA591127 6208 295 3.46124 10.210658 Pelodera teres 96650 Nematoda Nematoda 545 1.03e-150   NTclustered gi|158821915|gb|EU195979.1| 96650 g6040 i0 100 94.6949152542373 295 0 100 0 1 295 2219 1925 Pelodera teres strain EM437 28S ribosomal RNA gene, partial sequence blastn 27935 545 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Pelodera Pelodera teres
14594005 14594005 PRJNA591127_P_NODE_472_length_873_cov_4.216507_g388_i0 PRJNA591127 472 873 4.216507 36.81010611 Pelodera teres 96650 Nematoda Nematoda 1591 0   NTclustered gi|158821915|gb|EU195979.1| 96650 g388 i0 99.542 27.4650630011455 873 4 100 0 1 873 902 30 Pelodera teres strain EM437 28S ribosomal RNA gene, partial sequence blastn 23977 1591 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Pelodera Pelodera teres
15867789 15867789 PRJNA591127_P_NODE_28113_length_153_cov_3.301724_g27944_i0 PRJNA591127 28113 153 3.301724 5.0516377200000004 Pelodera teres 96650 Nematoda Nematoda 283 4.0799999999999995e-72   NTclustered gi|2451035706|gb|OQ566795.1| 96650 g27944 i0 100 99.6928104575163 153 0 100 0 1 153 999 847 Pelodera teres isolate f1 small subunit ribosomal RNA gene, partial sequence blastn 15253 283 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Pelodera Pelodera teres
15867840 15867840 PRJNA591127_P_NODE_3253_length_397_cov_3.038889_g3085_i0 PRJNA591127 3253 397 3.038889 12.06438933 Pelodera teres 96650 Nematoda Nematoda 734 0   NTclustered gi|158821915|gb|EU195979.1| 96650 g3085 i0 100 101.498740554156 397 0 100 0 1 397 1474 1870 Pelodera teres strain EM437 28S ribosomal RNA gene, partial sequence blastn 40295 734 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Pelodera Pelodera teres
18416817 18416817 PRJNA591127_P_NODE_11615_length_216_cov_3.000000_g11446_i0 PRJNA591127 11615 216 3 6.48 Pelodera teres 96650 Nematoda Nematoda 399 5.909999999999999e-107   NTclustered gi|158821915|gb|EU195979.1| 96650 g11446 i0 100 52.2685185185185 216 0 100 0 1 216 2657 2442 Pelodera teres strain EM437 28S ribosomal RNA gene, partial sequence blastn 11290 399 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Pelodera Pelodera teres

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;